Inhibitory properties of double-helix-forming circular oligonucleotides

Nucleic Acids Res. 1997 Dec 15;25(24):4954-61. doi: 10.1093/nar/25.24.4954.

Abstract

Several circular oligonucleotides were synthesized and characterized by electrospray ionization mass spectrometry. Experiments on termination of primer extension catalysed by DNA polymerases, Klenow fragment and Tth have demonstrated that a double helix forming circular 2'-deoxyribooligomer containing a 25mer sequence complementary to the target single-stranded DNA along with a 34mer random mismatching stretch appears to be a potent inhibitor of replication in vitro. Studies on inhibition of luciferase gene expression in a cell-free transcription-translation system have shown that a duplex forming circular 2'-deoxyribooligonucleotide containing a 25mer sequence complementary to the target mRNA and a 14mer random mismatching stretch can serve as an effective antisense compound as a standard linear complementary oligomer. Features of double helix forming circular oligonucleotides composed of 2'-deoxyribonucleosides seem to be useful for the design of new antigene and antisense agents.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Chromatography, High Pressure Liquid
  • DNA Polymerase I / metabolism
  • DNA Replication / drug effects*
  • DNA, Single-Stranded / genetics
  • Gene Targeting / methods*
  • Genes, Reporter
  • Luciferases / biosynthesis
  • Luciferases / genetics
  • Mass Spectrometry
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • Oligonucleotides / chemical synthesis
  • Oligonucleotides / chemistry
  • Oligonucleotides / pharmacology*
  • Oligonucleotides, Antisense / chemical synthesis
  • Oligonucleotides, Antisense / chemistry
  • Oligonucleotides, Antisense / pharmacology*
  • RNA, Messenger / antagonists & inhibitors*
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / genetics
  • Templates, Genetic

Substances

  • DNA, Single-Stranded
  • Oligonucleotides
  • Oligonucleotides, Antisense
  • RNA, Messenger
  • Recombinant Fusion Proteins
  • Luciferases
  • DNA Polymerase I