The 3'-untranslated region of hepatitis C virus RNA enhances translation from an internal ribosomal entry site

J Virol. 1998 Nov;72(11):8789-96. doi: 10.1128/JVI.72.11.8789-8796.1998.

Abstract

Translation of most eukaryotic mRNAs and many viral RNAs is enhanced by their poly(A) tails. Hepatitis C virus (HCV) contains a positive-stranded RNA genome which does not have a poly(A) tail but has a stretch of 98 nucleotides (X region) at the 3'-untranslated region (UTR), which assumes a highly conserved stem-loop structure. This X region binds a polypyrimidine tract-binding protein (PTB), which also binds to the internal ribosome entry site (IRES) in HCV 5'-UTR. These RNA-protein interactions may regulate its translation. We generated a set of HCV RNAs differing only in their 3'-UTRs and compared their translation efficiencies. HCV RNA containing the X region was translated three- to fivefold more than the corresponding RNAs without this region. Mutations that abolished PTB binding in the X region reduced, but did not completely abolish, enhancement in translation. The X region also enhanced translation from another unrelated IRES (from encephalomyocarditis virus RNA), but did not affect the 5'-end-dependent translation of globin mRNA in either monocistronic or bicistronic RNAs. It did not appear to affect RNA stability. The free X region added in trans, however, did not enhance translation, indicating that the translational enhancement by the X region occurs only in cis. These results demonstrate that the highly conserved 3' end of HCV RNA provides a novel mechanism for enhancement of HCV translation and may offer a target for antiviral agents.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 3' Untranslated Regions / chemistry
  • 3' Untranslated Regions / genetics*
  • Base Sequence
  • Cell Line
  • Chloramphenicol O-Acetyltransferase / genetics
  • Conserved Sequence
  • DNA Primers / genetics
  • Encephalomyocarditis virus / genetics
  • Genes, Viral / genetics
  • Globins / genetics
  • Hepacivirus / genetics*
  • Hepacivirus / metabolism
  • Humans
  • Luciferases / genetics
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Biosynthesis*
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • Ribosomes / metabolism
  • Ribosomes / virology
  • Viral Structural Proteins / genetics

Substances

  • 3' Untranslated Regions
  • DNA Primers
  • RNA, Viral
  • Viral Structural Proteins
  • Globins
  • Luciferases
  • Chloramphenicol O-Acetyltransferase