Identification of a potent DNase activity associated with RNase T of Escherichia coli

J Biol Chem. 1998 Dec 25;273(52):35126-31. doi: 10.1074/jbc.273.52.35126.

Abstract

RNase T was first identified as an enzyme responsible for end turnover of tRNA in Escherichia coli. Its activity, specific for tRNA-C-C-A, catalyzes the release of tRNA-C-C and AMP. RNase T, along with several other RNases, plays a role in maturation of several other RNA species by a similar limited nuclease activity. In previous work, we identified the gene for RNase T, rnt, as a high copy suppressor of the UV sensitivity conferred by deficiency in three single-strand DNA-specific exonucleases, RecJ, exonuclease I, and exonuclease VII. This suggested that RNase T may process DNA substrates as well. In this work, we show that purified RNase T possesses a potent 3' to 5' single-strand DNA-specific exonucleolytic activity. Its Km for single-strand DNA substrates is many orders of magnitude lower than that for tRNA, suggesting that single-strand DNA may be a natural biological substrate for RNase T. We suggest that the DNase activity of RNase T may play a role in end trimming reactions during DNA recombination and/or DNA repair.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA Repair
  • DNA, Bacterial / metabolism
  • DNA, Single-Stranded / metabolism*
  • Escherichia coli / enzymology*
  • Exodeoxyribonucleases / drug effects
  • Exodeoxyribonucleases / genetics
  • Exodeoxyribonucleases / metabolism*
  • Exoribonucleases / drug effects
  • Exoribonucleases / genetics
  • Exoribonucleases / metabolism*
  • Magnesium / pharmacology
  • Recombinant Proteins / metabolism
  • Substrate Specificity

Substances

  • DNA, Bacterial
  • DNA, Single-Stranded
  • Recombinant Proteins
  • Exodeoxyribonucleases
  • Exoribonucleases
  • exoribonuclease T
  • Magnesium