Borodovsky M - Search Results

1

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Besemer J, Lomsadze A, Borodovsky M. Besemer J, et al. Among authors: borodovsky m. Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607. Nucleic Acids Res. 2001. PMID: 11410670 Free PMC article.

2

Detection of new genes in a bacterial genome using Markov models for three gene classes.

Borodovsky M, McIninch JD, Koonin EV, Rudd KE, Médigue C, Danchin A. Borodovsky M, et al. Nucleic Acids Res. 1995 Sep 11;23(17):3554-62. doi: 10.1093/nar/23.17.3554. Nucleic Acids Res. 1995. PMID: 7567469 Free PMC article.

3

Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy.

Borodovsky M, Peresetsky A. Borodovsky M, et al. Comput Chem. 1994 Sep;18(3):259-67. doi: 10.1016/0097-8485(94)85022-4. Comput Chem. 1994. PMID: 7952897

4

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.

Borodovsky M, Rudd KE, Koonin EV. Borodovsky M, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4756-67. doi: 10.1093/nar/22.22.4756. Nucleic Acids Res. 1994. PMID: 7984428 Free PMC article.

5

Recognition of genes in DNA sequence with ambiguities.

Borodovsky M, McIninch J. Borodovsky M, et al. Biosystems. 1993;30(1-3):161-71. doi: 10.1016/0303-2647(93)90068-n. Biosystems. 1993. PMID: 8374073

6

GeneMark.hmm: new solutions for gene finding.

Lukashin AV, Borodovsky M. Lukashin AV, et al. Among authors: borodovsky m. Nucleic Acids Res. 1998 Feb 15;26(4):1107-15. doi: 10.1093/nar/26.4.1107. Nucleic Acids Res. 1998. PMID: 9461475 Free PMC article.

7

How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

Hayes WS, Borodovsky M. Hayes WS, et al. Among authors: borodovsky m. Genome Res. 1998 Nov;8(11):1154-71. doi: 10.1101/gr.8.11.1154. Genome Res. 1998. PMID: 9847079 Free article.

8

Heuristic approach to deriving models for gene finding.

Besemer J, Borodovsky M. Besemer J, et al. Among authors: borodovsky m. Nucleic Acids Res. 1999 Oct 1;27(19):3911-20. doi: 10.1093/nar/27.19.3911. Nucleic Acids Res. 1999. PMID: 10481031 Free PMC article.

9

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum.

Slupska MM, King AG, Fitz-Gibbon S, Besemer J, Borodovsky M, Miller JH. Slupska MM, et al. Among authors: borodovsky m. J Mol Biol. 2001 Jun 1;309(2):347-60. doi: 10.1006/jmbi.2001.4669. J Mol Biol. 2001. PMID: 11371158

10

A novel genetic island of meningitic Escherichia coli K1 containing the ibeA invasion gene (GimA): functional annotation and carbon-source-regulated invasion of human brain microvascular endothelial cells.

Huang SH, Chen YH, Kong G, Chen SH, Besemer J, Borodovsky M, Jong A. Huang SH, et al. Among authors: borodovsky m. Funct Integr Genomics. 2001 Sep;1(5):312-22. doi: 10.1007/s101420100039. Funct Integr Genomics. 2001. PMID: 11793250

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