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Human-mouse alignments with BLASTZ.
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Schwartz S, et al. Genome Res. 2003 Jan;13(1):103-7. doi: 10.1101/gr.809403. Genome Res. 2003. PMID: 12529312 Free PMC article.
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.
Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, Schwartz S, Furey TS, Whelan S, Goldman N, Smit A, Miller W, Chiaromonte F, Haussler D. Hardison RC, et al. Among authors: schwartz s. Genome Res. 2003 Jan;13(1):13-26. doi: 10.1101/gr.844103. Genome Res. 2003. PMID: 12529302 Free PMC article.
Distinguishing regulatory DNA from neutral sites.
Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F. Elnitski L, et al. Among authors: schwartz s. Genome Res. 2003 Jan;13(1):64-72. doi: 10.1101/gr.817703. Genome Res. 2003. PMID: 12529307 Free PMC article.
GALA, a database for genomic sequence alignments and annotations.
Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. Giardine B, et al. Among authors: schwartz s. Genome Res. 2003 Apr;13(4):732-41. doi: 10.1101/gr.603103. Genome Res. 2003. PMID: 12671007 Free PMC article.
PipMaker--a web server for aligning two genomic DNA sequences.
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. Schwartz S, et al. Genome Res. 2000 Apr;10(4):577-86. doi: 10.1101/gr.10.4.577. Genome Res. 2000. PMID: 10779500 Free PMC article.
PipMaker: a World Wide Web server for genomic sequence alignments.
Elnitski L, Riemer C, Schwartz S, Hardison R, Miller W. Elnitski L, et al. Among authors: schwartz s. Curr Protoc Bioinformatics. 2003 Feb;Chapter 10:Unit 10.2. doi: 10.1002/0471250953.bi1002s00. Curr Protoc Bioinformatics. 2003. PMID: 18428692
5,708 results