Ettwiller LM - Search Results

1

Discovering novel cis-regulatory motifs using functional networks.

Ettwiller LM, Rung J, Birney E. Ettwiller LM, et al. Genome Res. 2003 May;13(5):883-95. doi: 10.1101/gr.866403. Genome Res. 2003. PMID: 12727907 Free PMC article.

2

Comparative genomics: genome-wide analysis in metazoan eukaryotes.

Ureta-Vidal A, Ettwiller L, Birney E. Ureta-Vidal A, et al. Nat Rev Genet. 2003 Apr;4(4):251-62. doi: 10.1038/nrg1043. Nat Rev Genet. 2003. PMID: 12671656 Review.

3

The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates.

Ettwiller L, Paten B, Souren M, Loosli F, Wittbrodt J, Birney E. Ettwiller L, et al. Genome Biol. 2005;6(12):R104. doi: 10.1186/gb-2005-6-12-r104. Epub 2005 Dec 2. Genome Biol. 2005. PMID: 16356267 Free PMC article.

4

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.

Ettwiller L, Paten B, Ramialison M, Birney E, Wittbrodt J. Ettwiller L, et al. Nat Methods. 2007 Jul;4(7):563-5. doi: 10.1038/nmeth1061. Epub 2007 Jun 24. Nat Methods. 2007. PMID: 17589518

5

In vivo validation of a computationally predicted conserved Ath5 target gene set.

Del Bene F, Ettwiller L, Skowronska-Krawczyk D, Baier H, Matter JM, Birney E, Wittbrodt J. Del Bene F, et al. PLoS Genet. 2007 Sep;3(9):1661-71. doi: 10.1371/journal.pgen.0030159. Epub 2007 Aug 1. PLoS Genet. 2007. PMID: 17892326 Free PMC article.

6

Functional and topological characteristics of mammalian regulatory domains.

Symmons O, Uslu VV, Tsujimura T, Ruf S, Nassari S, Schwarzer W, Ettwiller L, Spitz F. Symmons O, et al. Genome Res. 2014 Mar;24(3):390-400. doi: 10.1101/gr.163519.113. Epub 2014 Jan 7. Genome Res. 2014. PMID: 24398455 Free PMC article.

7

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.

Mateo JL, van den Berg DL, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Lu QR, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B. Mateo JL, et al. Genome Res. 2015 Jan;25(1):41-56. doi: 10.1101/gr.173435.114. Epub 2014 Oct 7. Genome Res. 2015. PMID: 25294244 Free PMC article.

8

Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs.

Ugolini C, Mulroney L, Leger A, Castelli M, Criscuolo E, Williamson MK, Davidson AD, Almuqrin A, Giambruno R, Jain M, Frigè G, Olsen H, Tzertzinis G, Schildkraut I, Wulf MG, Corrêa IR, Ettwiller L, Clementi N, Clementi M, Mancini N, Birney E, Akeson M, Nicassio F, Matthews DA, Leonardi T. Ugolini C, et al. Nucleic Acids Res. 2022 Apr 8;50(6):3475-3489. doi: 10.1093/nar/gkac144. Nucleic Acids Res. 2022. PMID: 35244721 Free PMC article.

9

Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation.

Haudry Y, Ramialison M, Paten B, Wittbrodt J, Ettwiller L. Haudry Y, et al. Nat Protoc. 2010 Feb;5(2):323-34. doi: 10.1038/nprot.2009.158. Epub 2010 Feb 4. Nat Protoc. 2010. PMID: 20134431

10

Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish.

Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L. Mongin E, et al. PLoS One. 2011;6(5):e19747. doi: 10.1371/journal.pone.0019747. Epub 2011 May 27. PLoS One. 2011. PMID: 21637758 Free PMC article.

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