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Rat Genome Database (RGD): mapping disease onto the genome.
Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ. Twigger S, et al. Among authors: shimoyama m. Nucleic Acids Res. 2002 Jan 1;30(1):125-8. doi: 10.1093/nar/30.1.125. Nucleic Acids Res. 2002. PMID: 11752273 Free PMC article.
The Rat Genome Database (RGD): developments towards a phenome database.
de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H. de la Cruz N, et al. Among authors: shimoyama m. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91. doi: 10.1093/nar/gki050. Nucleic Acids Res. 2005. PMID: 15608243 Free PMC article.
Tools and strategies for physiological genomics: the Rat Genome Database.
Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ. Twigger SN, et al. Among authors: shimoyama m. Physiol Genomics. 2005 Oct 17;23(2):246-56. doi: 10.1152/physiolgenomics.00040.2005. Epub 2005 Aug 16. Physiol Genomics. 2005. PMID: 16106031 Free PMC article.
Using multiple ontologies to integrate complex biological data.
Shimoyama M, Petri V, Pasko D, Bromberg S, Wu W, Chen J, Nenasheva N, Kwitek A, Twigger S, Jacob H. Shimoyama M, et al. Comp Funct Genomics. 2005;6(7-8):373-8. doi: 10.1002/cfg.498. Comp Funct Genomics. 2005. PMID: 18629202 Free PMC article.
The Rat Genome Database 2009: variation, ontologies and pathways.
Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team. Dwinell MR, et al. Among authors: shimoyama m. Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. doi: 10.1093/nar/gkn842. Epub 2008 Nov 7. Nucleic Acids Res. 2009. PMID: 18996890 Free PMC article.
RGD: a comparative genomics platform.
Shimoyama M, Smith JR, Hayman T, Laulederkind S, Lowry T, Nigam R, Petri V, Wang SJ, Dwinell M, Jacob H; RGD Team. Shimoyama M, et al. Hum Genomics. 2011 Jan;5(2):124-9. doi: 10.1186/1479-7364-5-2-124. Hum Genomics. 2011. PMID: 21296746 Free PMC article.
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Laulederkind SJ, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Kowalski G, Liu W, Rood W, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team. Laulederkind SJ, et al. Among authors: shimoyama m. Database (Oxford). 2011 Feb 14;2011:bar002. doi: 10.1093/database/bar002. Print 2011. Database (Oxford). 2011. PMID: 21321022 Free PMC article.
The Rat Genome Database pathway portal.
Petri V, Shimoyama M, Hayman GT, Smith JR, Tutaj M, de Pons J, Dwinell MR, Munzenmaier DH, Twigger SN, Jacob HJ; RGD Team. Petri V, et al. Among authors: shimoyama m. Database (Oxford). 2011 Apr 8;2011:bar010. doi: 10.1093/database/bar010. Print 2011. Database (Oxford). 2011. PMID: 21478484 Free PMC article.
645 results