Yamashita R - Search Results

1

[Transcriptome analyses and transcriptome databases].

Suzuki Y, Yamashita R, Nakai K, Sugano S. Suzuki Y, et al. Among authors: yamashita r. Tanpakushitsu Kakusan Koso. 2004 Aug;49(11 Suppl):1859-65. Tanpakushitsu Kakusan Koso. 2004. PMID: 15377029 Review. Japanese. No abstract available.

2

DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs.

Suzuki Y, Yamashita R, Nakai K, Sugano S. Suzuki Y, et al. Among authors: yamashita r. Nucleic Acids Res. 2002 Jan 1;30(1):328-31. doi: 10.1093/nar/30.1.328. Nucleic Acids Res. 2002. PMID: 11752328 Free PMC article.

3

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.

Suzuki A, Wakaguri H, Yamashita R, Kawano S, Tsuchihara K, Sugano S, Suzuki Y, Nakai K. Suzuki A, et al. Among authors: yamashita r. Nucleic Acids Res. 2015 Jan;43(Database issue):D87-91. doi: 10.1093/nar/gku1080. Epub 2014 Nov 5. Nucleic Acids Res. 2015. PMID: 25378318 Free PMC article.

4

Large-scale collection and characterization of promoters of human and mouse genes.

Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Kel AE, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Takagi T, Nakai K, Sugano S. Suzuki Y, et al. Among authors: yamashita r. In Silico Biol. 2004;4(4):429-44. In Silico Biol. 2004. PMID: 15506993

5

DBTSS, DataBase of Transcriptional Start Sites: progress report 2004.

Suzuki Y, Yamashita R, Sugano S, Nakai K. Suzuki Y, et al. Among authors: yamashita r. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D78-81. doi: 10.1093/nar/gkh076. Nucleic Acids Res. 2004. PMID: 14681363 Free PMC article.

6

Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions.

Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Nakai K, Sugano S. Suzuki Y, et al. Among authors: yamashita r. Genome Res. 2004 Sep;14(9):1711-8. doi: 10.1101/gr.2435604. Genome Res. 2004. PMID: 15342556 Free PMC article.

7

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity.

Yamashita R, Suzuki Y, Sugano S, Nakai K. Yamashita R, et al. Gene. 2005 May 9;350(2):129-36. doi: 10.1016/j.gene.2005.01.012. Epub 2005 Mar 19. Gene. 2005. PMID: 15784181

8

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

Yamashita R, Suzuki Y, Wakaguri H, Tsuritani K, Nakai K, Sugano S. Yamashita R, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D86-9. doi: 10.1093/nar/gkj129. Nucleic Acids Res. 2006. PMID: 16381981 Free PMC article.

9

Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes.

Tsuritani K, Irie T, Yamashita R, Sakakibara Y, Wakaguri H, Kanai A, Mizushima-Sugano J, Sugano S, Nakai K, Suzuki Y. Tsuritani K, et al. Among authors: yamashita r. Genome Res. 2007 Jul;17(7):1005-14. doi: 10.1101/gr.6030107. Epub 2007 Jun 13. Genome Res. 2007. PMID: 17567985 Free PMC article.

10

DBTSS: database of transcription start sites, progress report 2008.

Wakaguri H, Yamashita R, Suzuki Y, Sugano S, Nakai K. Wakaguri H, et al. Among authors: yamashita r. Nucleic Acids Res. 2008 Jan;36(Database issue):D97-101. doi: 10.1093/nar/gkm901. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942421 Free PMC article.

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