Ilyin VA - Search Results

1

Friend, an integrated analytical front-end application for bioinformatics.

Abyzov A, Errami M, Leslin CM, Ilyin VA. Abyzov A, et al. Among authors: ilyin va. Bioinformatics. 2005 Sep 15;21(18):3677-8. doi: 10.1093/bioinformatics/bti602. Epub 2005 Aug 2. Bioinformatics. 2005. PMID: 16076889

2

Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.

Uzun A, Leslin CM, Abyzov A, Ilyin V. Uzun A, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W384-92. doi: 10.1093/nar/gkm232. Epub 2007 May 30. Nucleic Acids Res. 2007. PMID: 17537826 Free PMC article.

3

Structural exon database, SEDB, mapping exon boundaries on multiple protein structures.

Leslin CM, Abyzov A, Ilyin VA. Leslin CM, et al. Among authors: ilyin va. Bioinformatics. 2004 Jul 22;20(11):1801-3. doi: 10.1093/bioinformatics/bth150. Epub 2004 Feb 26. Bioinformatics. 2004. PMID: 14988102

4

Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.

Ilyin VA, Abyzov A, Leslin CM. Ilyin VA, et al. Protein Sci. 2004 Jul;13(7):1865-74. doi: 10.1110/ps.04672604. Protein Sci. 2004. PMID: 15215530 Free PMC article.

5

TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method.

Leslin CM, Abyzov A, Ilyin VA. Leslin CM, et al. Among authors: ilyin va. Nucleic Acids Res. 2007 Jan;35(Database issue):D317-21. doi: 10.1093/nar/gkl809. Epub 2006 Oct 25. Nucleic Acids Res. 2007. PMID: 17065464 Free PMC article.

6

A comprehensive analysis of non-sequential alignments between all protein structures.

Abyzov A, Ilyin VA. Abyzov A, et al. Among authors: ilyin va. BMC Struct Biol. 2007 Nov 16;7:78. doi: 10.1186/1472-6807-7-78. BMC Struct Biol. 2007. PMID: 18005453 Free PMC article.

7

An AP endonuclease 1-DNA polymerase beta complex: theoretical prediction of interacting surfaces.

Abyzov A, Uzun A, Strauss PR, Ilyin VA. Abyzov A, et al. Among authors: ilyin va. PLoS Comput Biol. 2008 Apr 25;4(4):e1000066. doi: 10.1371/journal.pcbi.1000066. PLoS Comput Biol. 2008. PMID: 18437203 Free PMC article.

8

UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB.

Godoy VG, Jarosz DF, Simon SM, Abyzov A, Ilyin V, Walker GC. Godoy VG, et al. Mol Cell. 2007 Dec 28;28(6):1058-70. doi: 10.1016/j.molcel.2007.10.025. Mol Cell. 2007. PMID: 18158902 Free PMC article.

9

Active site prediction for comparative model structures with thematics.

Shehadi IA, Abyzov A, Uzun A, Wei Y, Murga LF, Ilyin V, Ondrechen MJ. Shehadi IA, et al. J Bioinform Comput Biol. 2005 Feb;3(1):127-43. doi: 10.1142/s0219720005000916. J Bioinform Comput Biol. 2005. PMID: 15751116

10

DBAli: a database of protein structure alignments.

Martí-Renom MA, Ilyin VA, Sali A. Martí-Renom MA, et al. Among authors: ilyin va. Bioinformatics. 2001 Aug;17(8):746-7. doi: 10.1093/bioinformatics/17.8.746. Bioinformatics. 2001. PMID: 11524379

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