Bejerano G - Search Results

1

Computational screening of conserved genomic DNA in search of functional noncoding elements.

Bejerano G, Siepel AC, Kent WJ, Haussler D. Bejerano G, et al. Nat Methods. 2005 Jul;2(7):535-45. doi: 10.1038/nmeth0705-535. Nat Methods. 2005. PMID: 16170870 No abstract available.

2

Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages.

Chen HI, Turakhia Y, Bejerano G, Kingsley DM. Chen HI, et al. Among authors: bejerano g. Mol Biol Evol. 2023 Sep 1;40(9):msad188. doi: 10.1093/molbev/msad188. Mol Biol Evol. 2023. PMID: 37739926 Free PMC article.

3

Whole-genome comparisons identify repeated regulatory changes underlying convergent appendage evolution in diverse fish lineages.

Chen HI, Turakhia Y, Bejerano G, Kingsley DM. Chen HI, et al. Among authors: bejerano g. bioRxiv [Preprint]. 2023 Jan 31:2023.01.30.526059. doi: 10.1101/2023.01.30.526059. bioRxiv. 2023. Update in: Mol Biol Evol. 2023 Sep 1;40(9):msad188. doi: 10.1093/molbev/msad188 PMID: 36778215 Free PMC article. Updated. Preprint.

4

Ultraconserved elements in the human genome.

Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Bejerano G, et al. Science. 2004 May 28;304(5675):1321-5. doi: 10.1126/science.1098119. Epub 2004 May 6. Science. 2004. PMID: 15131266

5

Into the heart of darkness: large-scale clustering of human non-coding DNA.

Bejerano G, Haussler D, Blanchette M. Bejerano G, et al. Bioinformatics. 2004 Aug 4;20 Suppl 1:i40-8. doi: 10.1093/bioinformatics/bth946. Bioinformatics. 2004. PMID: 15262779

6

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D. Siepel A, et al. Among authors: bejerano g. Genome Res. 2005 Aug;15(8):1034-50. doi: 10.1101/gr.3715005. Epub 2005 Jul 15. Genome Res. 2005. PMID: 16024819 Free PMC article.

7

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: bejerano g. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.

8

A distal enhancer and an ultraconserved exon are derived from a novel retroposon.

Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D. Bejerano G, et al. Nature. 2006 May 4;441(7089):87-90. doi: 10.1038/nature04696. Epub 2006 Apr 16. Nature. 2006. PMID: 16625209

9

Identification and classification of conserved RNA secondary structures in the human genome.

Pedersen JS, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander ES, Kent J, Miller W, Haussler D. Pedersen JS, et al. Among authors: bejerano g. PLoS Comput Biol. 2006 Apr;2(4):e33. doi: 10.1371/journal.pcbi.0020033. Epub 2006 Apr 21. PLoS Comput Biol. 2006. PMID: 16628248 Free PMC article.

10

Forces shaping the fastest evolving regions in the human genome.

Pollard KS, Salama SR, King B, Kern AD, Dreszer T, Katzman S, Siepel A, Pedersen JS, Bejerano G, Baertsch R, Rosenbloom KR, Kent J, Haussler D. Pollard KS, et al. Among authors: bejerano g. PLoS Genet. 2006 Oct 13;2(10):e168. doi: 10.1371/journal.pgen.0020168. Epub 2006 Aug 23. PLoS Genet. 2006. PMID: 17040131 Free PMC article.

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