Mukhopadhyay J - Search Results

1

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.

Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Kapanidis AN, et al. Among authors: mukhopadhyay j. Mol Cell. 2005 Nov 11;20(3):347-56. doi: 10.1016/j.molcel.2005.10.012. Mol Cell. 2005. PMID: 16285917 Free article.

2

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Margeat E, et al. Among authors: mukhopadhyay j. Biophys J. 2006 Feb 15;90(4):1419-31. doi: 10.1529/biophysj.105.069252. Epub 2005 Nov 18. Biophys J. 2006. PMID: 16299085 Free PMC article.

3

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Mukhopadhyay J, et al. Cell. 2001 Aug 24;106(4):453-63. doi: 10.1016/s0092-8674(01)00464-0. Cell. 2001. PMID: 11525731 Free article.

4

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Mekler V, et al. Among authors: mukhopadhyay j. Cell. 2002 Mar 8;108(5):599-614. doi: 10.1016/s0092-8674(02)00667-0. Cell. 2002. PMID: 11893332 Free article.

5

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Mukhopadhyay J, et al. Methods Enzymol. 2003;371:144-59. doi: 10.1016/S0076-6879(03)71010-6. Methods Enzymol. 2003. PMID: 14712697 No abstract available.

6

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

Nickels BE, Mukhopadhyay J, Garrity SJ, Ebright RH, Hochschild A. Nickels BE, et al. Among authors: mukhopadhyay j. Nat Struct Mol Biol. 2004 Jun;11(6):544-50. doi: 10.1038/nsmb757. Epub 2004 May 2. Nat Struct Mol Biol. 2004. PMID: 15122345

7

Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel.

Mukhopadhyay J, Sineva E, Knight J, Levy RM, Ebright RH. Mukhopadhyay J, et al. Mol Cell. 2004 Jun 18;14(6):739-51. doi: 10.1016/j.molcel.2004.06.010. Mol Cell. 2004. PMID: 15200952 Free PMC article.

8

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation.

Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Lee NK, et al. Among authors: mukhopadhyay j. Biophys J. 2005 Apr;88(4):2939-53. doi: 10.1529/biophysj.104.054114. Epub 2005 Jan 14. Biophys J. 2005. PMID: 15653725 Free PMC article.

9

Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability.

Knight JL, Mekler V, Mukhopadhyay J, Ebright RH, Levy RM. Knight JL, et al. Among authors: mukhopadhyay j. Biophys J. 2005 Feb;88(2):925-38. doi: 10.1529/biophysj.104.050187. Epub 2004 Nov 12. Biophys J. 2005. PMID: 15542547 Free PMC article.

10

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation.

Tuske S, Sarafianos SG, Wang X, Hudson B, Sineva E, Mukhopadhyay J, Birktoft JJ, Leroy O, Ismail S, Clark AD Jr, Dharia C, Napoli A, Laptenko O, Lee J, Borukhov S, Ebright RH, Arnold E. Tuske S, et al. Among authors: mukhopadhyay j. Cell. 2005 Aug 26;122(4):541-52. doi: 10.1016/j.cell.2005.07.017. Cell. 2005. PMID: 16122422 Free PMC article.

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