Sharma CM - Search Results

1

How to find small non-coding RNAs in bacteria.

Vogel J, Sharma CM. Vogel J, et al. Among authors: sharma cm. Biol Chem. 2005 Dec;386(12):1219-38. doi: 10.1515/BC.2005.140. Biol Chem. 2005. PMID: 16336117 Review.

2

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites.

Sharma CM, Darfeuille F, Plantinga TH, Vogel J. Sharma CM, et al. Genes Dev. 2007 Nov 1;21(21):2804-17. doi: 10.1101/gad.447207. Genes Dev. 2007. PMID: 17974919 Free PMC article.

3

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.

Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J. Sittka A, et al. Among authors: sharma cm. PLoS Genet. 2008 Aug 22;4(8):e1000163. doi: 10.1371/journal.pgen.1000163. PLoS Genet. 2008. PMID: 18725932 Free PMC article.

4

Small RNA binding to 5' mRNA coding region inhibits translational initiation.

Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J. Bouvier M, et al. Among authors: sharma cm. Mol Cell. 2008 Dec 26;32(6):827-37. doi: 10.1016/j.molcel.2008.10.027. Mol Cell. 2008. PMID: 19111662 Free article.

5

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes.

Sittka A, Sharma CM, Rolle K, Vogel J. Sittka A, et al. Among authors: sharma cm. RNA Biol. 2009 Jul-Aug;6(3):266-75. doi: 10.4161/rna.6.3.8332. Epub 2009 Jul 3. RNA Biol. 2009. PMID: 19333007 Free article.

6

Fast mapping of short sequences with mismatches, insertions and deletions using index structures.

Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J. Hoffmann S, et al. Among authors: sharma cm. PLoS Comput Biol. 2009 Sep;5(9):e1000502. doi: 10.1371/journal.pcbi.1000502. Epub 2009 Sep 11. PLoS Comput Biol. 2009. PMID: 19750212 Free PMC article.

7

Experimental approaches for the discovery and characterization of regulatory small RNA.

Sharma CM, Vogel J. Sharma CM, et al. Curr Opin Microbiol. 2009 Oct;12(5):536-46. doi: 10.1016/j.mib.2009.07.006. Epub 2009 Sep 14. Curr Opin Microbiol. 2009. PMID: 19758836 Review.

8

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides.

Berghoff BA, Glaeser J, Sharma CM, Vogel J, Klug G. Berghoff BA, et al. Among authors: sharma cm. Mol Microbiol. 2009 Dec;74(6):1497-512. doi: 10.1111/j.1365-2958.2009.06949.x. Epub 2009 Nov 10. Mol Microbiol. 2009. PMID: 19906181 Free article.

9

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome.

Albrecht M, Sharma CM, Reinhardt R, Vogel J, Rudel T. Albrecht M, et al. Among authors: sharma cm. Nucleic Acids Res. 2010 Jan;38(3):868-77. doi: 10.1093/nar/gkp1032. Epub 2009 Nov 18. Nucleic Acids Res. 2010. PMID: 19923228 Free PMC article.

10

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Jäger D, et al. Among authors: sharma cm. Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21878-82. doi: 10.1073/pnas.0909051106. Epub 2009 Dec 8. Proc Natl Acad Sci U S A. 2009. PMID: 19996181 Free PMC article.

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