Swat M - Search Results

1

Biological profiling of gene groups utilizing Gene Ontology.

Blüthgen N, Brand K, Cajavec B, Swat M, Herzel H, Beule D. Blüthgen N, et al. Among authors: swat m. Genome Inform. 2005;16(1):106-15. Genome Inform. 2005. PMID: 16362912

2

Bifurcation analysis of the regulatory modules of the mammalian G1/S transition.

Swat M, Kel A, Herzel H. Swat M, et al. Bioinformatics. 2004 Jul 10;20(10):1506-11. doi: 10.1093/bioinformatics/bth110. Bioinformatics. 2004. PMID: 15231543

3

HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.

Truss M, Swat M, Kielbasa SM, Schäfer R, Herzel H, Hagemeier C. Truss M, et al. Among authors: swat m. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D108-11. doi: 10.1093/nar/gki131. Nucleic Acids Res. 2005. PMID: 15608157 Free PMC article.

4

libRoadRunner: a high performance SBML simulation and analysis library.

Somogyi ET, Bouteiller JM, Glazier JA, König M, Medley JK, Swat MH, Sauro HM. Somogyi ET, et al. Among authors: swat mh. Bioinformatics. 2015 Oct 15;31(20):3315-21. doi: 10.1093/bioinformatics/btv363. Epub 2015 Jun 17. Bioinformatics. 2015. PMID: 26085503 Free PMC article.

5

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

Sluka JP, Shirinifard A, Swat M, Cosmanescu A, Heiland RW, Glazier JA. Sluka JP, et al. Among authors: swat m. Bioinformatics. 2014 Aug 15;30(16):2367-74. doi: 10.1093/bioinformatics/btu210. Epub 2014 Apr 22. Bioinformatics. 2014. PMID: 24755304 Free PMC article.

6

Multicell simulations of development and disease using the CompuCell3D simulation environment.

Swat MH, Hester SD, Balter AI, Heiland RW, Zaitlen BL, Glazier JA. Swat MH, et al. Methods Mol Biol. 2009;500:361-428. doi: 10.1007/978-1-59745-525-1_13. Methods Mol Biol. 2009. PMID: 19399437 Free PMC article.

7

Multi-scale modeling of tissues using CompuCell3D.

Swat MH, Thomas GL, Belmonte JM, Shirinifard A, Hmeljak D, Glazier JA. Swat MH, et al. Methods Cell Biol. 2012;110:325-66. doi: 10.1016/B978-0-12-388403-9.00013-8. Methods Cell Biol. 2012. PMID: 22482955 Free PMC article.

8

Filopodial-Tension Model of Convergent-Extension of Tissues.

Belmonte JM, Swat MH, Glazier JA. Belmonte JM, et al. Among authors: swat mh. PLoS Comput Biol. 2016 Jun 20;12(6):e1004952. doi: 10.1371/journal.pcbi.1004952. eCollection 2016 Jun. PLoS Comput Biol. 2016. PMID: 27322528 Free PMC article.

9

Development of a coupled simulation toolkit for computational radiation biology based on Geant4 and CompuCell3D.

Liu R, Higley KA, Swat MH, Chaplain MAJ, Powathil GG, Glazier JA. Liu R, et al. Among authors: swat mh. Phys Med Biol. 2021 Feb 11;66(4):045026. doi: 10.1088/1361-6560/abd4f9. Phys Med Biol. 2021. PMID: 33339019

10

Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.

Popławski NJ, Shirinifard A, Swat M, Glazier JA. Popławski NJ, et al. Among authors: swat m. Math Biosci Eng. 2008 Apr;5(2):355-88. doi: 10.3934/mbe.2008.5.355. Math Biosci Eng. 2008. PMID: 18613738 Free PMC article.

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