Arkin AP - Search Results

1

OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments.

Price MN, Arkin AP, Alm EJ. Price MN, et al. Among authors: arkin ap. BMC Bioinformatics. 2006 Jan 13;7:19. doi: 10.1186/1471-2105-7-19. BMC Bioinformatics. 2006. PMID: 16412220 Free PMC article.

2

Biological networks.

Alm E, Arkin AP. Alm E, et al. Among authors: arkin ap. Curr Opin Struct Biol. 2003 Apr;13(2):193-202. doi: 10.1016/s0959-440x(03)00031-9. Curr Opin Struct Biol. 2003. PMID: 12727512 Review.

3

Global transcriptome analysis of the heat shock response of Shewanella oneidensis.

Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E, Arkin A, Thompson DK, Zhou J. Gao H, et al. J Bacteriol. 2004 Nov;186(22):7796-803. doi: 10.1128/JB.186.22.7796-7803.2004. J Bacteriol. 2004. PMID: 15516594 Free PMC article.

4

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria.

Rodionov DA, Dubchak I, Arkin A, Alm E, Gelfand MS. Rodionov DA, et al. Genome Biol. 2004;5(11):R90. doi: 10.1186/gb-2004-5-11-r90. Epub 2004 Oct 22. Genome Biol. 2004. PMID: 15535866 Free PMC article.

5

A novel method for accurate operon predictions in all sequenced prokaryotes.

Price MN, Huang KH, Alm EJ, Arkin AP. Price MN, et al. Among authors: arkin ap. Nucleic Acids Res. 2005 Feb 8;33(3):880-92. doi: 10.1093/nar/gki232. Print 2005. Nucleic Acids Res. 2005. PMID: 15701760 Free PMC article.

6

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions.

Liu Y, Gao W, Wang Y, Wu L, Liu X, Yan T, Alm E, Arkin A, Thompson DK, Fields MW, Zhou J. Liu Y, et al. J Bacteriol. 2005 Apr;187(7):2501-7. doi: 10.1128/JB.187.7.2501-2507.2005. J Bacteriol. 2005. PMID: 15774893 Free PMC article.

7

A latent variable model for chemogenomic profiling.

Flaherty P, Giaever G, Kumm J, Jordan MI, Arkin AP. Flaherty P, et al. Among authors: arkin ap. Bioinformatics. 2005 Aug 1;21(15):3286-93. doi: 10.1093/bioinformatics/bti515. Epub 2005 May 26. Bioinformatics. 2005. PMID: 15919724

8

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Price MN, Huang KH, Arkin AP, Alm EJ. Price MN, et al. Among authors: arkin ap. Genome Res. 2005 Jun;15(6):809-19. doi: 10.1101/gr.3368805. Genome Res. 2005. PMID: 15930492 Free PMC article.

9

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication.

Price MN, Alm EJ, Arkin AP. Price MN, et al. Among authors: arkin ap. Nucleic Acids Res. 2005 Jun 7;33(10):3224-34. doi: 10.1093/nar/gki638. Print 2005. Nucleic Acids Res. 2005. PMID: 15942025 Free PMC article.

10

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP. Alm EJ, et al. Among authors: arkin ap. Genome Res. 2005 Jul;15(7):1015-22. doi: 10.1101/gr.3844805. Genome Res. 2005. PMID: 15998914 Free PMC article.

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