Aluru S - Search Results

1

Turning repeats to advantage: scaffolding genomic contigs using LTR retrotransposons.

Kalyanaraman A, Aluru S, Schnable PS. Kalyanaraman A, et al. Among authors: aluru s. Comput Syst Bioinformatics Conf. 2006:167-78. Comput Syst Bioinformatics Conf. 2006. PMID: 17369635 Free article.

2

Efficient clustering of large EST data sets on parallel computers.

Kalyanaraman A, Aluru S, Kothari S, Brendel V. Kalyanaraman A, et al. Among authors: aluru s. Nucleic Acids Res. 2003 Jun 1;31(11):2963-74. doi: 10.1093/nar/gkg379. Nucleic Acids Res. 2003. PMID: 12771222 Free PMC article.

3

PCAP: a whole-genome assembly program.

Huang X, Wang J, Aluru S, Yang SP, Hillier L. Huang X, et al. Among authors: aluru s. Genome Res. 2003 Sep;13(9):2164-70. doi: 10.1101/gr.1390403. Genome Res. 2003. PMID: 12952883 Free PMC article.

4

A strategy for assembling the maize (Zea mays L.) genome.

Emrich SJ, Aluru S, Fu Y, Wen TJ, Narayanan M, Guo L, Ashlock DA, Schnable PS. Emrich SJ, et al. Among authors: aluru s. Bioinformatics. 2004 Jan 22;20(2):140-7. doi: 10.1093/bioinformatics/bth017. Bioinformatics. 2004. PMID: 14734303

5

A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans.

Mitreva M, Elling AA, Dante M, Kloek AP, Kalyanaraman A, Aluru S, Clifton SW, Bird DM, Baum TJ, McCarter JP. Mitreva M, et al. Among authors: aluru s. Mol Genet Genomics. 2004 Sep;272(2):138-48. doi: 10.1007/s00438-004-1054-0. Epub 2004 Aug 28. Mol Genet Genomics. 2004. PMID: 15338281

6

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes.

Fu Y, Emrich SJ, Guo L, Wen TJ, Ashlock DA, Aluru S, Schnable PS. Fu Y, et al. Among authors: aluru s. Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12282-7. doi: 10.1073/pnas.0503394102. Epub 2005 Aug 15. Proc Natl Acad Sci U S A. 2005. PMID: 16103354 Free PMC article.

7

Consensus genetic maps: a graph theoretic approach.

Jackson BN, Aluru S, Schnable PS. Jackson BN, et al. Among authors: aluru s. Proc IEEE Comput Syst Bioinform Conf. 2005:35-43. doi: 10.1109/csb.2005.26. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447960

8

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Kalyanaraman A, Aluru S. Kalyanaraman A, et al. Among authors: aluru s. Proc IEEE Comput Syst Bioinform Conf. 2005:56-64. doi: 10.1109/csb.2005.31. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447962

9

Space-conserving optimal DNA-protein alignment.

Ko P, Narayanan M, Kalyanaraman A, Aluru S. Ko P, et al. Among authors: aluru s. Proc IEEE Comput Syst Bioinform Conf. 2004:80-8. doi: 10.1109/csb.2004.1332420. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16448002

10

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Kalyanaraman A, Aluru S. Kalyanaraman A, et al. Among authors: aluru s. J Bioinform Comput Biol. 2006 Apr;4(2):197-216. doi: 10.1142/s021972000600203x. J Bioinform Comput Biol. 2006. PMID: 16819780

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