Royce TE - Search Results

1

An efficient pseudomedian filter for tiling microrrays.

Royce TE, Carriero NJ, Gerstein MB. Royce TE, et al. BMC Bioinformatics. 2007 Jun 7;8:186. doi: 10.1186/1471-2105-8-186. BMC Bioinformatics. 2007. PMID: 17555595 Free PMC article.

2

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.

Seringhaus M, Rozowsky J, Royce T, Nagalakshmi U, Jee J, Snyder M, Gerstein M. Seringhaus M, et al. BMC Genomics. 2008 Dec 31;9:635. doi: 10.1186/1471-2164-9-635. BMC Genomics. 2008. PMID: 19117516 Free PMC article.

3

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

4

Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.

Royce TE, Rozowsky JS, Luscombe NM, Emanuelsson O, Yu H, Zhu X, Snyder M, Gerstein MB. Royce TE, et al. Methods Enzymol. 2006;411:282-311. doi: 10.1016/S0076-6879(06)11015-0. Methods Enzymol. 2006. PMID: 16939796 Review.

5

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Among authors: royce te. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

6

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB. Royce TE, et al. Bioinformatics. 2007 Apr 15;23(8):988-97. doi: 10.1093/bioinformatics/btm052. Epub 2007 Mar 25. Bioinformatics. 2007. PMID: 17387113

7

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.

Royce TE, Rozowsky JS, Gerstein MB. Royce TE, et al. Nucleic Acids Res. 2007;35(15):e99. doi: 10.1093/nar/gkm549. Epub 2007 Aug 7. Nucleic Acids Res. 2007. PMID: 17686789 Free PMC article.

8

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool.

Yu H, Nguyen K, Royce T, Qian J, Nelson K, Snyder M, Gerstein M. Yu H, et al. Nucleic Acids Res. 2007;35(2):e8. doi: 10.1093/nar/gkl871. Epub 2006 Dec 7. Nucleic Acids Res. 2007. PMID: 17158151 Free PMC article.

9

Regulation of gene expression by a metabolic enzyme.

Hall DA, Zhu H, Zhu X, Royce T, Gerstein M, Snyder M. Hall DA, et al. Science. 2004 Oct 15;306(5695):482-4. doi: 10.1126/science.1096773. Science. 2004. PMID: 15486299

10

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M. Luscombe NM, et al. Among authors: royce te. Nucleic Acids Res. 2003 Jul 1;31(13):3477-82. doi: 10.1093/nar/gkg628. Nucleic Acids Res. 2003. PMID: 12824348 Free PMC article.

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