Archer J - Search Results

1

Understanding the diversification of HIV-1 groups M and O.

Archer J, Robertson DL. Archer J, et al. AIDS. 2007 Aug 20;21(13):1693-700. doi: 10.1097/QAD.0b013e32825eabd0. AIDS. 2007. PMID: 17690566

2

CTree: comparison of clusters between phylogenetic trees made easy.

Archer J, Robertson DL. Archer J, et al. Bioinformatics. 2007 Nov 1;23(21):2952-3. doi: 10.1093/bioinformatics/btm410. Epub 2007 Aug 23. Bioinformatics. 2007. PMID: 17717036

3

Identifying the important HIV-1 recombination breakpoints.

Archer J, Pinney JW, Fan J, Simon-Loriere E, Arts EJ, Negroni M, Robertson DL. Archer J, et al. PLoS Comput Biol. 2008 Sep 12;4(9):e1000178. doi: 10.1371/journal.pcbi.1000178. PLoS Comput Biol. 2008. PMID: 18787691 Free PMC article.

4

Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.

Archer J, Braverman MS, Taillon BE, Desany B, James I, Harrigan PR, Lewis M, Robertson DL. Archer J, et al. AIDS. 2009 Jun 19;23(10):1209-18. doi: 10.1097/QAD.0b013e32832b4399. AIDS. 2009. PMID: 19424056 Free PMC article.

5

The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach.

Archer J, Rambaut A, Taillon BE, Harrigan PR, Lewis M, Robertson DL. Archer J, et al. PLoS Comput Biol. 2010 Dec 16;6(12):e1001022. doi: 10.1371/journal.pcbi.1001022. PLoS Comput Biol. 2010. PMID: 21187908 Free PMC article.

6

Using knowledge of protein structural constraints to predict the evolution of HIV-1.

Williams SG, Madan R, Norris MG, Archer J, Mizuguchi K, Robertson DL, Lovell SC. Williams SG, et al. Among authors: archer j. J Mol Biol. 2011 Jul 29;410(5):1023-34. doi: 10.1016/j.jmb.2011.04.037. J Mol Biol. 2011. PMID: 21763504

7

Back to basics--how the evolution of the extracellular matrix underpinned vertebrate evolution.

Huxley-Jones J, Pinney JW, Archer J, Robertson DL, Boot-Handford RP. Huxley-Jones J, et al. Among authors: archer j. Int J Exp Pathol. 2009 Apr;90(2):95-100. doi: 10.1111/j.1365-2613.2008.00637.x. Int J Exp Pathol. 2009. PMID: 19335547 Free PMC article. Review.

8

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL. Archer J, et al. BMC Bioinformatics. 2012 Mar 23;13:47. doi: 10.1186/1471-2105-13-47. BMC Bioinformatics. 2012. PMID: 22443413 Free PMC article.

9

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.

Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME. Archer J, et al. PLoS One. 2012;7(11):e49602. doi: 10.1371/journal.pone.0049602. Epub 2012 Nov 14. PLoS One. 2012. PMID: 23166726 Free PMC article.

10

Sequence determinants of breakpoint location during HIV-1 intersubtype recombination.

Baird HA, Galetto R, Gao Y, Simon-Loriere E, Abreha M, Archer J, Fan J, Robertson DL, Arts EJ, Negroni M. Baird HA, et al. Among authors: archer j. Nucleic Acids Res. 2006;34(18):5203-16. doi: 10.1093/nar/gkl669. Epub 2006 Sep 26. Nucleic Acids Res. 2006. PMID: 17003055 Free PMC article.

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