Kulhánek P - Search Results

1

Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.

Réblová K, Fadrná E, Sarzynska J, Kulinski T, Kulhánek P, Ennifar E, Koca J, Sponer J. Réblová K, et al. Among authors: kulhanek p. Biophys J. 2007 Dec 1;93(11):3932-49. doi: 10.1529/biophysj.107.110056. Epub 2007 Aug 17. Biophys J. 2007. PMID: 17704156 Free PMC article.

2

A novel mechanism of proton transfer in protonated peptides.

Kulhánek P, Schlag EW, Koca J. Kulhánek P, et al. J Am Chem Soc. 2003 Nov 12;125(45):13678-9. doi: 10.1021/ja035800z. J Am Chem Soc. 2003. PMID: 14599203

3

Molecular dynamics simulations of glycosyltransferase LgtC.

Snajdrová L, Kulhánek P, Imberty A, Koca J. Snajdrová L, et al. Among authors: kulhanek p. Carbohydr Res. 2004 Apr 2;339(5):995-1006. doi: 10.1016/j.carres.2003.12.024. Carbohydr Res. 2004. PMID: 15010307

4

Effect of solvation on pinched cone-pinched cone interconversion of tetraethoxycalix[4]arene and tetraethoxythiacalix[4]arene.

Matousek J, Kulhánek P, Cajan M, Koca J. Matousek J, et al. Among authors: kulhanek p. J Phys Chem A. 2006 Jan 26;110(3):861-7. doi: 10.1021/jp055415r. J Phys Chem A. 2006. PMID: 16419982

5

Non-Watson-Crick base pairing in RNA. quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family.

Sponer JE, Spacková N, Kulhanek P, Leszczynski J, Sponer J. Sponer JE, et al. Among authors: kulhanek p. J Phys Chem A. 2005 Mar 17;109(10):2292-301. doi: 10.1021/jp050132k. J Phys Chem A. 2005. PMID: 16838999

6

Mechanism of hydrogen-bond array isomerization in tetrahydroxycalix[4]arene and tetrahydroxythiacalix[4]arene.

Matousek J, Cajan M, Kulhánek P, Koca J. Matousek J, et al. Among authors: kulhanek p. J Phys Chem A. 2008 Feb 7;112(5):1076-84. doi: 10.1021/jp710236g. Epub 2008 Jan 9. J Phys Chem A. 2008. PMID: 18181594

7

Molecular dynamics study of Pseudomonas aeruginosa lectin-II complexed with monosaccharides.

Mishra NK, Kulhánek P, Snajdrová L, Petrek M, Imberty A, Koca J. Mishra NK, et al. Among authors: kulhanek p. Proteins. 2008 Jul;72(1):382-92. doi: 10.1002/prot.21935. Proteins. 2008. PMID: 18214968

8

An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methods.

Réblová K, Střelcová Z, Kulhánek P, Beššeová I, Mathews DH, Nostrand KV, Yildirim I, Turner DH, Sponer J. Réblová K, et al. Among authors: kulhanek p. J Chem Theory Comput. 2010 Jan 1;2010(6):910-929. J Chem Theory Comput. 2010. PMID: 21132104 Free PMC article.

9

Influence of stereochemistry on proton transfer in protonated tripeptide models.

Soliman NA, Kulhánek P, Koča J. Soliman NA, et al. Among authors: kulhanek p. J Mol Model. 2012 Mar;18(3):871-9. doi: 10.1007/s00894-011-1116-2. Epub 2011 May 28. J Mol Model. 2012. PMID: 21625903

10

Exploring reaction pathways for O-GlcNAc transferase catalysis. A string method study.

Kumari M, Kozmon S, Kulhánek P, Štepán J, Tvaroška I, Koča J. Kumari M, et al. Among authors: kulhanek p. J Phys Chem B. 2015 Mar 26;119(12):4371-81. doi: 10.1021/jp511235f. Epub 2015 Mar 17. J Phys Chem B. 2015. PMID: 25731954 Free article.

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