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RosettaDock in CAPRI rounds 6-12.
Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D. Wang C, et al. Among authors: andre i. Proteins. 2007 Dec 1;69(4):758-63. doi: 10.1002/prot.21684. Proteins. 2007. PMID: 17671979
Prediction of the structure of symmetrical protein assemblies.
André I, Bradley P, Wang C, Baker D. André I, et al. Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17656-61. doi: 10.1073/pnas.0702626104. Epub 2007 Oct 31. Proc Natl Acad Sci U S A. 2007. PMID: 17978193 Free PMC article.
Emergence of symmetry in homooligomeric biological assemblies.
André I, Strauss CE, Kaplan DB, Bradley P, Baker D. André I, et al. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16148-52. doi: 10.1073/pnas.0807576105. Epub 2008 Oct 10. Proc Natl Acad Sci U S A. 2008. PMID: 18849473 Free PMC article.
Simultaneous prediction of protein folding and docking at high resolution.
Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D. Das R, et al. Among authors: andre i. Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18978-83. doi: 10.1073/pnas.0904407106. Epub 2009 Oct 28. Proc Natl Acad Sci U S A. 2009. PMID: 19864631 Free PMC article.
Rosetta in CAPRI rounds 13-19.
Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Fleishman SJ, et al. Among authors: andre i. Proteins. 2010 Nov 15;78(15):3212-8. doi: 10.1002/prot.22784. Proteins. 2010. PMID: 20597089 Free PMC article.
Alternate states of proteins revealed by detailed energy landscape mapping.
Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Tyka MD, et al. Among authors: andre i. J Mol Biol. 2011 Jan 14;405(2):607-18. doi: 10.1016/j.jmb.2010.11.008. Epub 2010 Nov 10. J Mol Biol. 2011. PMID: 21073878 Free PMC article.
182 results