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Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF. Langenberger D, et al. Among authors: hertel j. Bioinformatics. 2009 Sep 15;25(18):2298-301. doi: 10.1093/bioinformatics/btp419. Epub 2009 Jul 6. Bioinformatics. 2009. PMID: 19584066
RNAsnoop: efficient target prediction for H/ACA snoRNAs.
Tafer H, Kehr S, Hertel J, Hofacker IL, Stadler PF. Tafer H, et al. Among authors: hertel j. Bioinformatics. 2010 Mar 1;26(5):610-6. doi: 10.1093/bioinformatics/btp680. Epub 2009 Dec 16. Bioinformatics. 2010. PMID: 20015949
snoStrip: a snoRNA annotation pipeline.
Bartschat S, Kehr S, Tafer H, Stadler PF, Hertel J. Bartschat S, et al. Among authors: hertel j. Bioinformatics. 2014 Jan 1;30(1):115-6. doi: 10.1093/bioinformatics/btt604. Epub 2013 Oct 29. Bioinformatics. 2014. PMID: 24174566
Phylogenetic distribution of plant snoRNA families.
Patra Bhattacharya D, Canzler S, Kehr S, Hertel J, Grosse I, Stadler PF. Patra Bhattacharya D, et al. Among authors: hertel j. BMC Genomics. 2016 Nov 24;17(1):969. doi: 10.1186/s12864-016-3301-2. BMC Genomics. 2016. PMID: 27881081 Free PMC article.
The expansion of the metazoan microRNA repertoire.
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF; Students of Bioinformatics Computer Labs 2004 and 2005. Hertel J, et al. BMC Genomics. 2006 Feb 15;7:25. doi: 10.1186/1471-2164-7-25. BMC Genomics. 2006. PMID: 16480513 Free PMC article.
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF. Washietl S, et al. Among authors: hertel j. Genome Res. 2007 Jun;17(6):852-64. doi: 10.1101/gr.5650707. Genome Res. 2007. PMID: 17568003 Free PMC article.
621 results