Bodenmiller B - Search Results

1

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.

Bodenmiller B, Malmstrom J, Gerrits B, Campbell D, Lam H, Schmidt A, Rinner O, Mueller LN, Shannon PT, Pedrioli PG, Panse C, Lee HK, Schlapbach R, Aebersold R. Bodenmiller B, et al. Mol Syst Biol. 2007;3:139. doi: 10.1038/msb4100182. Epub 2007 Oct 16. Mol Syst Biol. 2007. PMID: 17940529 Free PMC article. Review.

2

Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.

Tao WA, Wollscheid B, O'Brien R, Eng JK, Li XJ, Bodenmiller B, Watts JD, Hood L, Aebersold R. Tao WA, et al. Among authors: bodenmiller b. Nat Methods. 2005 Aug;2(8):591-8. doi: 10.1038/nmeth776. Nat Methods. 2005. PMID: 16094384

3

Reproducible isolation of distinct, overlapping segments of the phosphoproteome.

Bodenmiller B, Mueller LN, Mueller M, Domon B, Aebersold R. Bodenmiller B, et al. Nat Methods. 2007 Mar;4(3):231-7. doi: 10.1038/nmeth1005. Epub 2007 Feb 11. Nat Methods. 2007. PMID: 17293869

4

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Jünger MA, Eng JK, Aebersold R, Tao WA. Bodenmiller B, et al. Mol Biosyst. 2007 Apr;3(4):275-86. doi: 10.1039/b617545g. Epub 2007 Feb 19. Mol Biosyst. 2007. PMID: 17372656

5

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M. Mueller LN, et al. Among authors: bodenmiller b. Proteomics. 2007 Oct;7(19):3470-80. doi: 10.1002/pmic.200700057. Proteomics. 2007. PMID: 17726677

6

Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence.

Ulintz PJ, Bodenmiller B, Andrews PC, Aebersold R, Nesvizhskii AI. Ulintz PJ, et al. Among authors: bodenmiller b. Mol Cell Proteomics. 2008 Jan;7(1):71-87. doi: 10.1074/mcp.M700128-MCP200. Epub 2007 Sep 13. Mol Cell Proteomics. 2008. PMID: 17872894 Free article.

7

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.

Schmidt A, Gehlenborg N, Bodenmiller B, Mueller LN, Campbell D, Mueller M, Aebersold R, Domon B. Schmidt A, et al. Among authors: bodenmiller b. Mol Cell Proteomics. 2008 Nov;7(11):2138-50. doi: 10.1074/mcp.M700498-MCP200. Epub 2008 May 29. Mol Cell Proteomics. 2008. PMID: 18511481 Free PMC article.

8

Proteomics studies confirm the presence of alternative protein isoforms on a large scale.

Tress ML, Bodenmiller B, Aebersold R, Valencia A. Tress ML, et al. Among authors: bodenmiller b. Genome Biol. 2008;9(11):R162. doi: 10.1186/gb-2008-9-11-r162. Epub 2008 Nov 18. Genome Biol. 2008. PMID: 19017398 Free PMC article.

9

PhosphoPep--a database of protein phosphorylation sites in model organisms.

Bodenmiller B, Campbell D, Gerrits B, Lam H, Jovanovic M, Picotti P, Schlapbach R, Aebersold R. Bodenmiller B, et al. Nat Biotechnol. 2008 Dec;26(12):1339-40. doi: 10.1038/nbt1208-1339. Nat Biotechnol. 2008. PMID: 19060867 Free PMC article. No abstract available.

10

Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification.

Ulintz PJ, Yocum AK, Bodenmiller B, Aebersold R, Andrews PC, Nesvizhskii AI. Ulintz PJ, et al. Among authors: bodenmiller b. J Proteome Res. 2009 Feb;8(2):887-99. doi: 10.1021/pr800535h. J Proteome Res. 2009. PMID: 19072539 Free PMC article.

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