Gelfand MS - Search Results

1

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL. Rodionov DA, et al. Among authors: gelfand ms. Nucleic Acids Res. 2008 Apr;36(6):2032-46. doi: 10.1093/nar/gkn046. Epub 2008 Feb 14. Nucleic Acids Res. 2008. PMID: 18276644 Free PMC article.

2

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. Rodionov DA, et al. Among authors: gelfand ms. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3. BMC Genomics. 2011. PMID: 21810205 Free PMC article.

3

Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.

Kazanov MD, Li X, Gelfand MS, Osterman AL, Rodionov DA. Kazanov MD, et al. Among authors: gelfand ms. Nucleic Acids Res. 2013 Jan;41(2):790-803. doi: 10.1093/nar/gks1184. Epub 2012 Dec 2. Nucleic Acids Res. 2013. PMID: 23209028 Free PMC article.

4

Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria.

Ashniev GA, Sernova NV, Shevkoplias AE, Rodionov ID, Rodionova IA, Vitreschak AG, Gelfand MS, Rodionov DA. Ashniev GA, et al. Among authors: gelfand ms. BMC Genomics. 2022 Aug 25;23(Suppl 6):558. doi: 10.1186/s12864-022-08796-y. BMC Genomics. 2022. PMID: 36008760 Free PMC article.

5

Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. Rodionov DA, et al. Among authors: gelfand ms. Nucleic Acids Res. 2003 Dec 1;31(23):6748-57. doi: 10.1093/nar/gkg900. Nucleic Acids Res. 2003. PMID: 14627808 Free PMC article.

6

Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.

Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. Rodionov DA, et al. Among authors: gelfand ms. Nucleic Acids Res. 2004 Jun 23;32(11):3340-53. doi: 10.1093/nar/gkh659. Print 2004. Nucleic Acids Res. 2004. PMID: 15215334 Free PMC article.

7

Computational identification of BioR, a transcriptional regulator of biotin metabolism in Alphaproteobacteria, and of its binding signal.

Rodionov DA, Gelfand MS. Rodionov DA, et al. Among authors: gelfand ms. FEMS Microbiol Lett. 2006 Feb;255(1):102-7. doi: 10.1111/j.1574-6968.2005.00070.x. FEMS Microbiol Lett. 2006. PMID: 16436068

8

Engineering transcription factors with novel DNA-binding specificity using comparative genomics.

Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV. Desai TA, et al. Among authors: gelfand ms. Nucleic Acids Res. 2009 May;37(8):2493-503. doi: 10.1093/nar/gkp079. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264798 Free PMC article.

9

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov PS, Laikova ON, Novichkova ES, Gelfand MS, Arkin AP, Dubchak I, Rodionov DA. Novichkov PS, et al. Among authors: gelfand ms. Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. doi: 10.1093/nar/gkp894. Epub 2009 Nov 1. Nucleic Acids Res. 2010. PMID: 19884135 Free PMC article.

10

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I. Novichkov PS, et al. Among authors: gelfand ms. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11. Nucleic Acids Res. 2010. PMID: 20542910 Free PMC article.

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