Zhong S - Search Results

1

Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells.

Chen CC, Zhu XG, Zhong S. Chen CC, et al. Among authors: zhong s. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S18. doi: 10.1186/1471-2164-9-S1-S18. BMC Genomics. 2008. PMID: 18366607 Free PMC article.

2

Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.

Xie D, Cai J, Chia NY, Ng HH, Zhong S. Xie D, et al. Among authors: zhong s. Genome Res. 2008 Aug;18(8):1325-35. doi: 10.1101/gr.072769.107. Epub 2008 May 15. Genome Res. 2008. PMID: 18490265 Free PMC article.

3

Inferring gene regulatory networks by thermodynamic modeling.

Chen CC, Zhong S. Chen CC, et al. Among authors: zhong s. BMC Genomics. 2008 Sep 16;9 Suppl 2(Suppl 2):S19. doi: 10.1186/1471-2164-9-S2-S19. BMC Genomics. 2008. PMID: 18831784 Free PMC article.

4

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.

He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S. He X, et al. Among authors: zhong s. PLoS One. 2009 Dec 1;4(12):e8155. doi: 10.1371/journal.pone.0008155. PLoS One. 2009. PMID: 19956545 Free PMC article.

5

Dissecting early differentially expressed genes in a mixture of differentiating embryonic stem cells.

Hong F, Fang F, He X, Cao X, Chipperfield H, Xie D, Wong WH, Ng HH, Zhong S. Hong F, et al. Among authors: zhong s. PLoS Comput Biol. 2009 Dec;5(12):e1000607. doi: 10.1371/journal.pcbi.1000607. Epub 2009 Dec 18. PLoS Comput Biol. 2009. PMID: 20019792 Free PMC article.

6

Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species.

Xie D, Chen CC, Ptaszek LM, Xiao S, Cao X, Fang F, Ng HH, Lewin HA, Cowan C, Zhong S. Xie D, et al. Among authors: zhong s. Genome Res. 2010 Jun;20(6):804-15. doi: 10.1101/gr.100594.109. Epub 2010 Mar 10. Genome Res. 2010. PMID: 20219939 Free PMC article.

7

Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.

Cai J, Xie D, Fan Z, Chipperfield H, Marden J, Wong WH, Zhong S. Cai J, et al. Among authors: zhong s. PLoS Comput Biol. 2010 Mar 12;6(3):e1000707. doi: 10.1371/journal.pcbi.1000707. PLoS Comput Biol. 2010. PMID: 20300647 Free PMC article.

8

Network-based comparison of temporal gene expression patterns.

Huang W, Cao X, Zhong S. Huang W, et al. Among authors: zhong s. Bioinformatics. 2010 Dec 1;26(23):2944-51. doi: 10.1093/bioinformatics/btq561. Epub 2010 Sep 30. Bioinformatics. 2010. PMID: 20889495 Free PMC article.

9

Towards an evolutionary model of transcription networks.

Xie D, Chen CC, He X, Cao X, Zhong S. Xie D, et al. Among authors: zhong s. PLoS Comput Biol. 2011 Jun;7(6):e1002064. doi: 10.1371/journal.pcbi.1002064. Epub 2011 Jun 9. PLoS Comput Biol. 2011. PMID: 21695281 Free PMC article.

10

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression.

Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. Ament SA, et al. Among authors: zhong s. PLoS Genet. 2012;8(3):e1002596. doi: 10.1371/journal.pgen.1002596. Epub 2012 Mar 29. PLoS Genet. 2012. PMID: 22479195 Free PMC article.

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