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Page 1
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.
Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK Jr, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ Jr, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S. Taylor CF, et al. Among authors: sansone sa. Nat Biotechnol. 2008 Aug;26(8):889-96. doi: 10.1038/nbt.1411. Nat Biotechnol. 2008. PMID: 18688244 Free PMC article.
ArrayExpress--a public repository for microarray gene expression data at the EBI.
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA. Brazma A, et al. Among authors: sansone sa. Nucleic Acids Res. 2003 Jan 1;31(1):68-71. doi: 10.1093/nar/gkg091. Nucleic Acids Res. 2003. PMID: 12519949 Free PMC article.
ArrayExpress: a public database of gene expression data at EBI.
Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA. Rocca-Serra P, et al. Among authors: sansone sa. C R Biol. 2003 Oct-Nov;326(10-11):1075-8. doi: 10.1016/j.crvi.2003.09.026. C R Biol. 2003. PMID: 14744115 Free article.
Submission of microarray data to public repositories.
Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N. Ball CA, et al. Among authors: sansone sa. PLoS Biol. 2004 Sep;2(9):E317. doi: 10.1371/journal.pbio.0020317. Epub 2004 Aug 31. PLoS Biol. 2004. PMID: 15340489 Free PMC article.
Standards for microarray data: an open letter.
Ball C, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N; MGED Society. Ball C, et al. Among authors: sansone sa. Environ Health Perspect. 2004 Aug;112(12):A666-7. doi: 10.1289/ehp.112-1277123. Environ Health Perspect. 2004. PMID: 15345376 Free PMC article. No abstract available.
The ArrayExpress gene expression database: a software engineering and implementation perspective.
Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A, Abeygunawardena N, Contrino S, Holloway E, Rocca-Serra P, Mukherjee G, Shojatalab M, Kapushesky M, Sansone SA, Farne A, Rayner T, Brazma A. Sarkans U, et al. Among authors: sansone sa. Bioinformatics. 2005 Apr 15;21(8):1495-501. doi: 10.1093/bioinformatics/bti157. Epub 2004 Nov 25. Bioinformatics. 2005. PMID: 15564302
Summary recommendations for standardization and reporting of metabolic analyses.
Lindon JC, Nicholson JK, Holmes E, Keun HC, Craig A, Pearce JT, Bruce SJ, Hardy N, Sansone SA, Antti H, Jonsson P, Daykin C, Navarange M, Beger RD, Verheij ER, Amberg A, Baunsgaard D, Cantor GH, Lehman-McKeeman L, Earll M, Wold S, Johansson E, Haselden JN, Kramer K, Thomas C, Lindberg J, Schuppe-Koistinen I, Wilson ID, Reily MD, Robertson DG, Senn H, Krotzky A, Kochhar S, Powell J, van der Ouderaa F, Plumb R, Schaefer H, Spraul M; Standard Metabolic Reporting Structures working group. Lindon JC, et al. Among authors: sansone sa. Nat Biotechnol. 2005 Jul;23(7):833-8. doi: 10.1038/nbt0705-833. Nat Biotechnol. 2005. PMID: 16003371 No abstract available.
Wrestling with SUMO and bio-ontologies.
Stoeckert C, Ball C, Brazma A, Brinkman R, Causton H, Fan L, Fostel J, Fragoso G, Heiskanen M, Holstege F, Morrison N, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Sarkans U, Sherlock G, Stevens R, Taylor C, Taylor R, Whetzel P, White J. Stoeckert C, et al. Among authors: sansone sa. Nat Biotechnol. 2006 Jan;24(1):21-2; author reply 23. doi: 10.1038/nbt0106-21a. Nat Biotechnol. 2006. PMID: 16404382 No abstract available.
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr. Whetzel PL, et al. Among authors: sansone sa. Bioinformatics. 2006 Apr 1;22(7):866-73. doi: 10.1093/bioinformatics/btl005. Epub 2006 Jan 21. Bioinformatics. 2006. PMID: 16428806
129 results