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Capturing escape in infectious disease dynamics.
Cobey S, Koelle K. Cobey S, et al. Trends Ecol Evol. 2008 Oct;23(10):572-7. doi: 10.1016/j.tree.2008.06.008. Epub 2008 Aug 19. Trends Ecol Evol. 2008. PMID: 18715671 Review.
Measures of population immunity can predict the dominant clade of influenza A (H3N2) in the 2017-2018 season and reveal age-associated differences in susceptibility and antibody-binding specificity.
Kim K, Vieira MC, Gouma S, Weirick ME, Hensley SE, Cobey S. Kim K, et al. Among authors: cobey s. medRxiv [Preprint]. 2024 Oct 10:2023.10.26.23297569. doi: 10.1101/2023.10.26.23297569. medRxiv. 2024. Update in: Influenza Other Respir Viruses. 2024 Nov;18(11):e70033. doi: 10.1111/irv.70033 PMID: 37961288 Free PMC article. Updated. Preprint.
High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains.
Loes AN, Tarabi RAL, Huddleston J, Touyon L, Wong SS, Cheng SMS, Leung NHL, Hannon WW, Bedford T, Cobey S, Cowling BJ, Bloom JD. Loes AN, et al. Among authors: cobey s. bioRxiv [Preprint]. 2024 Mar 9:2024.03.08.584176. doi: 10.1101/2024.03.08.584176. bioRxiv. 2024. Update in: J Virol. 2024 Oct 22;98(10):e0068924. doi: 10.1128/jvi.00689-24 PMID: 38496577 Free PMC article. Updated. Preprint.
Antigen-driven colonic inflammation is associated with development of dysplasia in primary sclerosing cholangitis.
Shaw DG, Aguirre-Gamboa R, Vieira MC, Gona S, DiNardi N, Wang A, Dumaine A, Gelderloos-Arends J, Earley ZM, Meckel KR, Ciszewski C, Castillo A, Monroe K, Torres J, Shah SC, Colombel JF, Itzkowitz S, Newberry R, Cohen RD, Rubin DT, Quince C, Cobey S, Jonkers IH, Weber CR, Pekow J, Wilson PC, Barreiro LB, Jabri B. Shaw DG, et al. Among authors: cobey s. Nat Med. 2023 Jun;29(6):1520-1529. doi: 10.1038/s41591-023-02372-x. Epub 2023 Jun 15. Nat Med. 2023. PMID: 37322120 Free PMC article.
Germline-encoded specificities and the predictability of the B cell response.
Vieira MC, Palm AE, Stamper CT, Tepora ME, Nguyen KD, Pham TD, Boyd SD, Wilson PC, Cobey S. Vieira MC, et al. Among authors: cobey s. PLoS Pathog. 2023 Aug 25;19(8):e1011603. doi: 10.1371/journal.ppat.1011603. eCollection 2023 Aug. PLoS Pathog. 2023. PMID: 37624867 Free PMC article.
Reduced effectiveness of repeat influenza vaccination: distinguishing among within-season waning, recent clinical infection, and subclinical infection.
Bi Q, Dickerman BA, Nguyen HQ, Martin ET, Gaglani M, Wernli KJ, Balasubramani GK, Flannery B, Lipsitch M, Cobey S; US Flu Vaccine Effectiveness Network Investigators. Bi Q, et al. Among authors: cobey s. medRxiv [Preprint]. 2024 Apr 10:2023.03.12.23287173. doi: 10.1101/2023.03.12.23287173. medRxiv. 2024. Update in: J Infect Dis. 2024 Apr 30:jiae220. doi: 10.1093/infdis/jiae220 PMID: 37016669 Free PMC article. Updated. Preprint.
CpG-creating mutations are costly in many human viruses.
Caudill VR, Qin S, Winstead R, Kaur J, Tisthammer K, Pineda EG, Solis C, Cobey S, Bedford T, Carja O, Eggo RM, Koelle K, Lythgoe K, Regoes R, Roy S, Allen N, Aviles M, Baker BA, Bauer W, Bermudez S, Carlson C, Castellanos E, Catalan FL, Chemel AK, Elliot J, Evans D, Fiutek N, Fryer E, Goodfellow SM, Hecht M, Hopp K, Hopson ED Jr, Jaberi A, Kinney C, Lao D, Le A, Lo J, Lopez AG, López A, Lorenzo FG, Luu GT, Mahoney AR, Melton RL, Nascimento GD, Pradhananga A, Rodrigues NS, Shieh A, Sims J, Singh R, Sulaeman H, Thu R, Tran K, Tran L, Winters EJ, Wong A, Pennings PS. Caudill VR, et al. Among authors: cobey s. Evol Ecol. 2020;34(3):339-359. doi: 10.1007/s10682-020-10039-z. Epub 2020 Apr 24. Evol Ecol. 2020. PMID: 32508375 Free PMC article.
87 results