Oehmen CS - Search Results

1

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.

Webb-Robertson BJ, Oehmen CS, Shah AR. Webb-Robertson BJ, et al. Among authors: oehmen cs. Comput Biol Chem. 2008 Dec;32(6):458-61. doi: 10.1016/j.compbiolchem.2008.07.017. Epub 2008 Jul 16. Comput Biol Chem. 2008. PMID: 18722814

2

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.

Shah AR, Oehmen CS, Harper J, Webb-Robertson BJ. Shah AR, et al. Among authors: oehmen cs. Comput Biol Chem. 2007 Apr;31(2):138-42. doi: 10.1016/j.compbiolchem.2007.02.012. Epub 2007 Feb 23. Comput Biol Chem. 2007. PMID: 17416337

3

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

Shah AR, Oehmen CS, Webb-Robertson BJ. Shah AR, et al. Among authors: oehmen cs. Bioinformatics. 2008 Mar 15;24(6):783-90. doi: 10.1093/bioinformatics/btn028. Epub 2008 Feb 1. Bioinformatics. 2008. PMID: 18245127

4

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Webb-Robertson BJ, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2008 Jul 1;24(13):1503-9. doi: 10.1093/bioinformatics/btn218. Epub 2008 May 3. Bioinformatics. 2008. Corrected and republished in: Bioinformatics. 2010 Jul 1;26(13):1677-83. doi: 10.1093/bioinformatics/btq251 PMID: 18453551 Corrected and republished.

5

Physicochemical property distributions for accurate and rapid pairwise protein homology detection.

Webb-Robertson BJ, Ratuiste KG, Oehmen CS. Webb-Robertson BJ, et al. Among authors: oehmen cs. BMC Bioinformatics. 2010 Mar 19;11:145. doi: 10.1186/1471-2105-11-145. BMC Bioinformatics. 2010. PMID: 20302613 Free PMC article.

6

Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.

Cannon WR, Jarman KH, Webb-Robertson BJ, Baxter DJ, Oehmen CS, Jarman KD, Heredia-Langner A, Auberry KJ, Anderson GA. Cannon WR, et al. Among authors: oehmen cs. J Proteome Res. 2005 Sep-Oct;4(5):1687-98. doi: 10.1021/pr050147v. J Proteome Res. 2005. PMID: 16212422

7

PQuad--a visual analysis platform for proteomic data exploration of microbial organisms.

Webb-Robertson BJ, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2007 Jul 1;23(13):1705-7. doi: 10.1093/bioinformatics/btm132. Epub 2007 May 5. Bioinformatics. 2007. PMID: 17483503

8

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Webb-Robertson BJ, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2010 Jul 1;26(13):1677-83. doi: 10.1093/bioinformatics/btq251. Bioinformatics. 2010. PMID: 20568665

9

SVM-BALSA: remote homology detection based on Bayesian sequence alignment.

Webb-Robertson BJ, Oehmen C, Matzke M. Webb-Robertson BJ, et al. Comput Biol Chem. 2005 Dec;29(6):440-3. doi: 10.1016/j.compbiolchem.2005.09.006. Epub 2005 Nov 10. Comput Biol Chem. 2005. PMID: 16290168

10

Computational prediction of type III and IV secreted effectors in gram-negative bacteria.

McDermott JE, Corrigan A, Peterson E, Oehmen C, Niemann G, Cambronne ED, Sharp D, Adkins JN, Samudrala R, Heffron F. McDermott JE, et al. Infect Immun. 2011 Jan;79(1):23-32. doi: 10.1128/IAI.00537-10. Epub 2010 Oct 25. Infect Immun. 2011. PMID: 20974833 Free PMC article. Review.

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