Gibas CJ - Search Results

1

Background correction using dinucleotide affinities improves the performance of GCRMA.

Gharaibeh RZ, Fodor AA, Gibas CJ. Gharaibeh RZ, et al. Among authors: gibas cj. BMC Bioinformatics. 2008 Oct 23;9:452. doi: 10.1186/1471-2105-9-452. BMC Bioinformatics. 2008. PMID: 18947404 Free PMC article.

2

Application of equilibrium models of solution hybridization to microarray design and analysis.

Gharaibeh RZ, Newton JM, Weller JW, Gibas CJ. Gharaibeh RZ, et al. Among authors: gibas cj. PLoS One. 2010 Jun 10;5(6):e11048. doi: 10.1371/journal.pone.0011048. PLoS One. 2010. PMID: 20548788 Free PMC article.

3

Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model.

Gharaibeh RZ, Fodor AA, Gibas CJ. Gharaibeh RZ, et al. Among authors: gibas cj. PLoS One. 2010 Dec 30;5(12):e14464. doi: 10.1371/journal.pone.0014464. PLoS One. 2010. PMID: 21209932 Free PMC article.

4

The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization.

Garhyan J, Gharaibeh RZ, McGee S, Gibas CJ. Garhyan J, et al. Among authors: gibas cj. BMC Res Notes. 2013 Feb 27;6:72. doi: 10.1186/1756-0500-6-72. BMC Res Notes. 2013. PMID: 23445545 Free PMC article.

5

Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates.

Gharaibeh RZ, Fodor AA, Gibas CJ. Gharaibeh RZ, et al. Among authors: gibas cj. Comput Biol Chem. 2007 Apr;31(2):92-8. doi: 10.1016/j.compbiolchem.2007.02.008. Epub 2007 Feb 20. Comput Biol Chem. 2007. PMID: 17387043 Free PMC article.

6

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Zahn LM, Ma X, Altman NS, Zhang Q, Wall PK, Tian D, Gibas CJ, Gharaibeh R, Leebens-Mack JH, Depamphilis CW, Ma H. Zahn LM, et al. Among authors: gibas cj. Genome Biol. 2010;11(10):R101. doi: 10.1186/gb-2010-11-10-r101. Epub 2010 Oct 15. Genome Biol. 2010. PMID: 20950453 Free PMC article.

7

Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment.

Sorgen A, Johnson J, Lambirth K, Clinton SM, Redmond M, Fodor A, Gibas C. Sorgen A, et al. Antibiotics (Basel). 2021 Mar 26;10(4):352. doi: 10.3390/antibiotics10040352. Antibiotics (Basel). 2021. PMID: 33810449 Free PMC article.

8

Molecular targets for rapid identification of Brucella spp.

Ratushna VG, Sturgill DM, Ramamoorthy S, Reichow SA, He Y, Lathigra R, Sriranganathan N, Halling SM, Boyle SM, Gibas CJ. Ratushna VG, et al. Among authors: gibas cj. BMC Microbiol. 2006 Feb 22;6:13. doi: 10.1186/1471-2180-6-13. BMC Microbiol. 2006. PMID: 16504063 Free PMC article.

9

Secondary structure in the target as a confounding factor in synthetic oligomer microarray design.

Ratushna VG, Weller JW, Gibas CJ. Ratushna VG, et al. Among authors: gibas cj. BMC Genomics. 2005 Mar 8;6:31. doi: 10.1186/1471-2164-6-31. BMC Genomics. 2005. PMID: 15755320 Free PMC article.

10

Simulome: a genome sequence and variant simulator.

Price A, Gibas C. Price A, et al. Bioinformatics. 2017 Jun 15;33(12):1876-1878. doi: 10.1093/bioinformatics/btx091. Epub 2017 Feb 10. Bioinformatics. 2017. PMID: 28186240 Free PMC article.

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