Farnham PJ - Search Results

1

N-Myc regulates a widespread euchromatic program in the human genome partially independent of its role as a classical transcription factor.

Cotterman R, Jin VX, Krig SR, Lemen JM, Wey A, Farnham PJ, Knoepfler PS. Cotterman R, et al. Among authors: farnham pj. Cancer Res. 2008 Dec 1;68(23):9654-62. doi: 10.1158/0008-5472.CAN-08-1961. Cancer Res. 2008. PMID: 19047142 Free PMC article.

2

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.

Bieda M, Xu X, Singer MA, Green R, Farnham PJ. Bieda M, et al. Among authors: farnham pj. Genome Res. 2006 May;16(5):595-605. doi: 10.1101/gr.4887606. Epub 2006 Apr 10. Genome Res. 2006. PMID: 16606705 Free PMC article.

3

Suz12 binds to silenced regions of the genome in a cell-type-specific manner.

Squazzo SL, O'Geen H, Komashko VM, Krig SR, Jin VX, Jang SW, Margueron R, Reinberg D, Green R, Farnham PJ. Squazzo SL, et al. Among authors: farnham pj. Genome Res. 2006 Jul;16(7):890-900. doi: 10.1101/gr.5306606. Epub 2006 Jun 2. Genome Res. 2006. PMID: 16751344 Free PMC article.

4

A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.

Jin VX, Rabinovich A, Squazzo SL, Green R, Farnham PJ. Jin VX, et al. Among authors: farnham pj. Genome Res. 2006 Dec;16(12):1585-95. doi: 10.1101/gr.5520206. Epub 2006 Oct 19. Genome Res. 2006. PMID: 17053090 Free PMC article.

5

Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.

Elnitski L, Jin VX, Farnham PJ, Jones SJ. Elnitski L, et al. Among authors: farnham pj. Genome Res. 2006 Dec;16(12):1455-64. doi: 10.1101/gr.4140006. Epub 2006 Oct 19. Genome Res. 2006. PMID: 17053094 Free article. Review.

6

Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays.

Krig SR, Jin VX, Bieda MC, O'Geen H, Yaswen P, Green R, Farnham PJ. Krig SR, et al. Among authors: farnham pj. J Biol Chem. 2007 Mar 30;282(13):9703-9712. doi: 10.1074/jbc.M611752200. Epub 2007 Jan 26. J Biol Chem. 2007. PMID: 17259635 Free PMC article.

7

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ. O'Geen H, et al. Among authors: farnham pj. PLoS Genet. 2007 Jun;3(6):e89. doi: 10.1371/journal.pgen.0030089. Epub 2007 Apr 19. PLoS Genet. 2007. PMID: 17542650 Free PMC article.

8

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.

Jin VX, O'Geen H, Iyengar S, Green R, Farnham PJ. Jin VX, et al. Among authors: farnham pj. Genome Res. 2007 Jun;17(6):807-17. doi: 10.1101/gr.6006107. Genome Res. 2007. PMID: 17567999 Free PMC article.

9

A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members.

Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ, Green R, Farnham PJ. Xu X, et al. Among authors: farnham pj. Genome Res. 2007 Nov;17(11):1550-61. doi: 10.1101/gr.6783507. Epub 2007 Oct 1. Genome Res. 2007. PMID: 17908821 Free PMC article.

10

Genome-scale ChIP-chip analysis using 10,000 human cells.

Acevedo LG, Iniguez AL, Holster HL, Zhang X, Green R, Farnham PJ. Acevedo LG, et al. Among authors: farnham pj. Biotechniques. 2007 Dec;43(6):791-7. doi: 10.2144/000112625. Biotechniques. 2007. PMID: 18251256 Free PMC article.

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