Dubchak I - Search Results

1

Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors.

De Val S, Chi NC, Meadows SM, Minovitsky S, Anderson JP, Harris IS, Ehlers ML, Agarwal P, Visel A, Xu SM, Pennacchio LA, Dubchak I, Krieg PA, Stainier DY, Black BL. De Val S, et al. Among authors: dubchak i. Cell. 2008 Dec 12;135(6):1053-64. doi: 10.1016/j.cell.2008.10.049. Cell. 2008. PMID: 19070576 Free PMC article.

2

In vivo enhancer analysis of human conserved non-coding sequences.

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. Pennacchio LA, et al. Among authors: dubchak i. Nature. 2006 Nov 23;444(7118):499-502. doi: 10.1038/nature05295. Epub 2006 Nov 5. Nature. 2006. PMID: 17086198 Free article.

3

VISTA Enhancer Browser--a database of tissue-specific human enhancers.

Visel A, Minovitsky S, Dubchak I, Pennacchio LA. Visel A, et al. Among authors: dubchak i. Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92. doi: 10.1093/nar/gkl822. Epub 2006 Nov 27. Nucleic Acids Res. 2007. PMID: 17130149 Free PMC article.

4

Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

Zambon AC, Zhang L, Minovitsky S, Kanter JR, Prabhakar S, Salomonis N, Vranizan K, Dubchak I, Conklin BR, Insel PA. Zambon AC, et al. Among authors: dubchak i. Proc Natl Acad Sci U S A. 2005 Jun 14;102(24):8561-6. doi: 10.1073/pnas.0503363102. Epub 2005 Jun 6. Proc Natl Acad Sci U S A. 2005. PMID: 15939874 Free PMC article.

5

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.

Dubchak I, Munoz M, Poliakov A, Salomonis N, Minovitsky S, Bodmer R, Zambon AC. Dubchak I, et al. Bioinformatics. 2013 Aug 15;29(16):2059-61. doi: 10.1093/bioinformatics/btt318. Epub 2013 Jun 4. Bioinformatics. 2013. PMID: 23736530 Free PMC article.

6

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL. Shah N, et al. BMC Bioinformatics. 2005 Dec 8;6:292. doi: 10.1186/1471-2105-6-292. BMC Bioinformatics. 2005. PMID: 16336665 Free PMC article.

7

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.

Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG. Das D, et al. Among authors: dubchak i. Nucleic Acids Res. 2007;35(14):4845-57. doi: 10.1093/nar/gkm485. Epub 2007 Jul 10. Nucleic Acids Res. 2007. PMID: 17626050 Free PMC article.

8

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons.

Minovitsky S, Gee SL, Schokrpur S, Dubchak I, Conboy JG. Minovitsky S, et al. Among authors: dubchak i. Nucleic Acids Res. 2005 Feb 3;33(2):714-24. doi: 10.1093/nar/gki210. Print 2005. Nucleic Acids Res. 2005. PMID: 15691898 Free PMC article.

9

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences.

Minovitsky S, Stegmaier P, Kel A, Kondrashov AS, Dubchak I. Minovitsky S, et al. Among authors: dubchak i. BMC Genomics. 2007 Oct 18;8:378. doi: 10.1186/1471-2164-8-378. BMC Genomics. 2007. PMID: 17945028 Free PMC article.

10

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.

Shah N, Couronne O, Pennacchio LA, Brudno M, Batzoglou S, Bethel EW, Rubin EM, Hamann B, Dubchak I. Shah N, et al. Among authors: dubchak i. Bioinformatics. 2004 Mar 22;20(5):636-43. doi: 10.1093/bioinformatics/btg459. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 15033870

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