Riggins RB - Search Results

1

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Zhang B, et al. Among authors: riggins rb. Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26. Bioinformatics. 2009. PMID: 19112081 Free PMC article.

2

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

Chen L, Xuan J, Wang Y, Hoffman EP, Riggins RB, Clarke R. Chen L, et al. Among authors: riggins rb. Int J Comput Biol Drug Des. 2009;2(1):1-20. doi: 10.1504/ijcbdd.2009.027582. Int J Comput Biol Drug Des. 2009. PMID: 20054984 Free PMC article.

3

Multilevel support vector regression analysis to identify condition-specific regulatory networks.

Chen L, Xuan J, Riggins RB, Wang Y, Hoffman EP, Clarke R. Chen L, et al. Among authors: riggins rb. Bioinformatics. 2010 Jun 1;26(11):1416-22. doi: 10.1093/bioinformatics/btq144. Epub 2010 Apr 7. Bioinformatics. 2010. PMID: 20375112 Free PMC article.

4

Motif-guided sparse decomposition of gene expression data for regulatory module identification.

Gong T, Xuan J, Chen L, Riggins RB, Li H, Hoffman EP, Clarke R, Wang Y. Gong T, et al. Among authors: riggins rb. BMC Bioinformatics. 2011 Mar 22;12:82. doi: 10.1186/1471-2105-12-82. BMC Bioinformatics. 2011. PMID: 21426557 Free PMC article.

5

Identifying cancer biomarkers by network-constrained support vector machines.

Chen L, Xuan J, Riggins RB, Clarke R, Wang Y. Chen L, et al. Among authors: riggins rb. BMC Syst Biol. 2011 Oct 12;5:161. doi: 10.1186/1752-0509-5-161. BMC Syst Biol. 2011. PMID: 21992556 Free PMC article.

6

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.

Gu J, Xuan J, Riggins RB, Chen L, Wang Y, Clarke R. Gu J, et al. Among authors: riggins rb. Bioinformatics. 2012 Aug 1;28(15):1990-7. doi: 10.1093/bioinformatics/bts296. Epub 2012 May 17. Bioinformatics. 2012. PMID: 22595208 Free PMC article.

7

Identifying protein interaction subnetworks by a bagging Markov random field-based method.

Chen L, Xuan J, Riggins RB, Wang Y, Clarke R. Chen L, et al. Among authors: riggins rb. Nucleic Acids Res. 2013 Jan;41(2):e42. doi: 10.1093/nar/gks951. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161673 Free PMC article.

8

Reconstruction of transcriptional regulatory networks by stability-based network component analysis.

Chen X, Xuan J, Wang C, Shajahan AN, Riggins RB, Clarke R. Chen X, et al. Among authors: riggins rb. IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1347-58. doi: 10.1109/TCBB.2012.146. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24407294 Free PMC article.

9

Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells.

Clarke R, Shajahan AN, Riggins RB, Cho Y, Crawford A, Xuan J, Wang Y, Zwart A, Nehra R, Liu MC. Clarke R, et al. Among authors: riggins rb. J Steroid Biochem Mol Biol. 2009 Mar;114(1-2):8-20. doi: 10.1016/j.jsbmb.2008.12.023. J Steroid Biochem Mol Biol. 2009. PMID: 19444933 Free PMC article.

10

Interferon regulatory factor-1 signaling regulates the switch between autophagy and apoptosis to determine breast cancer cell fate.

Schwartz-Roberts JL, Cook KL, Chen C, Shajahan-Haq AN, Axelrod M, Wärri A, Riggins RB, Jin L, Haddad BR, Kallakury BV, Baumann WT, Clarke R. Schwartz-Roberts JL, et al. Among authors: riggins rb. Cancer Res. 2015 Mar 15;75(6):1046-55. doi: 10.1158/0008-5472.CAN-14-1851. Epub 2015 Jan 9. Cancer Res. 2015. PMID: 25576084 Free PMC article.

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