Nicolet CM - Search Results

1

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms.

Luo MC, Xu K, Ma Y, Deal KR, Nicolet CM, Dvorak J. Luo MC, et al. Among authors: nicolet cm. BMC Genomics. 2009 Jan 18;10:28. doi: 10.1186/1471-2164-10-28. BMC Genomics. 2009. PMID: 19149906 Free PMC article.

2

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay.

Akhunov E, Nicolet C, Dvorak J. Akhunov E, et al. Theor Appl Genet. 2009 Aug;119(3):507-17. doi: 10.1007/s00122-009-1059-5. Epub 2009 May 18. Theor Appl Genet. 2009. PMID: 19449174 Free PMC article.

3

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker Discovery(F).

Ono NN, Britton MT, Fass JN, Nicolet CM, Lin D, Tian L. Ono NN, et al. Among authors: nicolet cm. J Integr Plant Biol. 2011 Oct;53(10):800-13. doi: 10.1111/j.1744-7909.2011.01073.x. J Integr Plant Biol. 2011. PMID: 21910825

4

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Blahnik KR, Dou L, O'Geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ. Blahnik KR, et al. Among authors: nicolet cm. Nucleic Acids Res. 2010 Jan;38(3):e13. doi: 10.1093/nar/gkp1012. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906703 Free PMC article.

5

Comparison of sample preparation methods for ChIP-chip assays.

O'Geen H, Nicolet CM, Blahnik K, Green R, Farnham PJ. O'Geen H, et al. Among authors: nicolet cm. Biotechniques. 2006 Nov;41(5):577-80. doi: 10.2144/000112268. Biotechniques. 2006. PMID: 17140114 Free PMC article.

6

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, Jafari N, Raghavachari N, Gandara J, Garcia-Reyero N, Hendrickson C, Roberson D, Rosenfeld J, Smith T, Underwood JG, Wang M, Zumbo P, Baldwin DA, Grills GS, Mason CE. Li S, et al. Among authors: nicolet cm. Nat Biotechnol. 2014 Sep;32(9):915-925. doi: 10.1038/nbt.2972. Epub 2014 Aug 24. Nat Biotechnol. 2014. PMID: 25150835 Free PMC article.

7

dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression.

O'Geen H, Ren C, Nicolet CM, Perez AA, Halmai J, Le VM, Mackay JP, Farnham PJ, Segal DJ. O'Geen H, et al. Among authors: nicolet cm. Nucleic Acids Res. 2017 Sep 29;45(17):9901-9916. doi: 10.1093/nar/gkx578. Nucleic Acids Res. 2017. PMID: 28973434 Free PMC article.

8

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters.

Ni W, Perez AA, Schreiner S, Nicolet CM, Farnham PJ. Ni W, et al. Among authors: nicolet cm. Nucleic Acids Res. 2020 Jun 19;48(11):5986-6000. doi: 10.1093/nar/gkaa384. Nucleic Acids Res. 2020. PMID: 32406922 Free PMC article.

9

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes.

Blattler A, Yao L, Witt H, Guo Y, Nicolet CM, Berman BP, Farnham PJ. Blattler A, et al. Among authors: nicolet cm. Genome Biol. 2014 Sep 20;15(9):469. doi: 10.1186/s13059-014-0469-0. Genome Biol. 2014. PMID: 25239471 Free PMC article.

10

Evaluation of commercially available RNA amplification kits for RNA sequencing using very low input amounts of total RNA.

Shanker S, Paulson A, Edenberg HJ, Peak A, Perera A, Alekseyev YO, Beckloff N, Bivens NJ, Donnelly R, Gillaspy AF, Grove D, Gu W, Jafari N, Kerley-Hamilton JS, Lyons RH, Tepper C, Nicolet CM. Shanker S, et al. Among authors: nicolet cm. J Biomol Tech. 2015 Apr;26(1):4-18. doi: 10.7171/jbt.15-2601-001. J Biomol Tech. 2015. PMID: 25649271 Free PMC article.

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