Bender A - Search Results

1

Use of ligand based models for protein domains to predict novel molecular targets and applications to triage affinity chromatography data.

Bender A, Mikhailov D, Glick M, Scheiber J, Davies JW, Cleaver S, Marshall S, Tallarico JA, Harrington E, Cornella-Taracido I, Jenkins JL. Bender A, et al. J Proteome Res. 2009 May;8(5):2575-85. doi: 10.1021/pr900107z. J Proteome Res. 2009. PMID: 19271732

2

"Bayes affinity fingerprints" improve retrieval rates in virtual screening and define orthogonal bioactivity space: when are multitarget drugs a feasible concept?

Bender A, Jenkins JL, Glick M, Deng Z, Nettles JH, Davies JW. Bender A, et al. J Chem Inf Model. 2006 Nov-Dec;46(6):2445-56. doi: 10.1021/ci600197y. J Chem Inf Model. 2006. PMID: 17125186

3

Bridging chemical and biological space: "target fishing" using 2D and 3D molecular descriptors.

Nettles JH, Jenkins JL, Bender A, Deng Z, Davies JW, Glick M. Nettles JH, et al. Among authors: bender a. J Med Chem. 2006 Nov 16;49(23):6802-10. doi: 10.1021/jm060902w. J Med Chem. 2006. PMID: 17154510

4

Flexible 3D pharmacophores as descriptors of dynamic biological space.

Nettles JH, Jenkins JL, Williams C, Clark AM, Bender A, Deng Z, Davies JW, Glick M. Nettles JH, et al. Among authors: bender a. J Mol Graph Model. 2007 Oct;26(3):622-33. doi: 10.1016/j.jmgm.2007.02.005. Epub 2007 Mar 1. J Mol Graph Model. 2007. PMID: 17395510

5

"Plate cherry picking": a novel semi-sequential screening paradigm for cheaper, faster, information-rich compound selection.

Crisman TJ, Jenkins JL, Parker CN, Hill WA, Bender A, Deng Z, Nettles JH, Davies JW, Glick M. Crisman TJ, et al. Among authors: bender a. J Biomol Screen. 2007 Apr;12(3):320-7. doi: 10.1177/1087057107299427. J Biomol Screen. 2007. PMID: 17438067

6

Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure.

Bender A, Scheiber J, Glick M, Davies JW, Azzaoui K, Hamon J, Urban L, Whitebread S, Jenkins JL. Bender A, et al. ChemMedChem. 2007 Jun;2(6):861-73. doi: 10.1002/cmdc.200700026. ChemMedChem. 2007. PMID: 17477341

7

Modeling promiscuity based on in vitro safety pharmacology profiling data.

Azzaoui K, Hamon J, Faller B, Whitebread S, Jacoby E, Bender A, Jenkins JL, Urban L. Azzaoui K, et al. Among authors: bender a. ChemMedChem. 2007 Jun;2(6):874-80. doi: 10.1002/cmdc.200700036. ChemMedChem. 2007. PMID: 17492703

8

Understanding false positives in reporter gene assays: in silico chemogenomics approaches to prioritize cell-based HTS data.

Crisman TJ, Parker CN, Jenkins JL, Scheiber J, Thoma M, Kang ZB, Kim R, Bender A, Nettles JH, Davies JW, Glick M. Crisman TJ, et al. Among authors: bender a. J Chem Inf Model. 2007 Jul-Aug;47(4):1319-27. doi: 10.1021/ci6005504. Epub 2007 Jul 4. J Chem Inf Model. 2007. PMID: 17608469

9

Chemogenomic data analysis: prediction of small-molecule targets and the advent of biological fingerprint.

Bender A, Young DW, Jenkins JL, Serrano M, Mikhailov D, Clemons PA, Davies JW. Bender A, et al. Comb Chem High Throughput Screen. 2007 Sep;10(8):719-31. doi: 10.2174/138620707782507313. Comb Chem High Throughput Screen. 2007. PMID: 18045083 Review.

10

Integrating high-content screening and ligand-target prediction to identify mechanism of action.

Young DW, Bender A, Hoyt J, McWhinnie E, Chirn GW, Tao CY, Tallarico JA, Labow M, Jenkins JL, Mitchison TJ, Feng Y. Young DW, et al. Among authors: bender a. Nat Chem Biol. 2008 Jan;4(1):59-68. doi: 10.1038/nchembio.2007.53. Epub 2007 Dec 9. Nat Chem Biol. 2008. PMID: 18066055

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