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SHREC: a short-read error correction method.
Schröder J, Schröder H, Puglisi SJ, Sinha R, Schmidt B. Schröder J, et al. Among authors: puglisi sj. Bioinformatics. 2009 Sep 1;25(17):2157-63. doi: 10.1093/bioinformatics/btp379. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542152
A fast hybrid short read fragment assembly algorithm.
Schmidt B, Sinha R, Beresford-Smith B, Puglisi SJ. Schmidt B, et al. Among authors: puglisi sj. Bioinformatics. 2009 Sep 1;25(17):2279-80. doi: 10.1093/bioinformatics/btp374. Epub 2009 Jun 17. Bioinformatics. 2009. PMID: 19535537
emMAW: computing minimal absent words in external memory.
Héliou A, Pissis SP, Puglisi SJ. Héliou A, et al. Among authors: puglisi sj. Bioinformatics. 2017 Sep 1;33(17):2746-2749. doi: 10.1093/bioinformatics/btx209. Bioinformatics. 2017. PMID: 28407038
Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Among authors: puglisi sj. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Succinct dynamic de Bruijn graphs.
Alipanahi B, Kuhnle A, Puglisi SJ, Salmela L, Boucher C. Alipanahi B, et al. Among authors: puglisi sj. Bioinformatics. 2021 Aug 4;37(14):1946-1952. doi: 10.1093/bioinformatics/btaa546. Bioinformatics. 2021. PMID: 32462192 Free PMC article.
Fast and accurate correction of optical mapping data via spaced seeds.
Salmela L, Mukherjee K, Puglisi SJ, Muggli MD, Boucher C. Salmela L, et al. Among authors: puglisi sj. Bioinformatics. 2020 May 1;36(9):2974. doi: 10.1093/bioinformatics/btaa101. Bioinformatics. 2020. PMID: 32187358 Free PMC article. No abstract available.
Hybrid indexes for repetitive datasets.
Ferrada H, Gagie T, Hirvola T, Puglisi SJ. Ferrada H, et al. Among authors: puglisi sj. Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130137. doi: 10.1098/rsta.2013.0137. Print 2014 May 28. Philos Trans A Math Phys Eng Sci. 2014. PMID: 24751871
17 results