de Haan JR - Search Results

1

Genome-wide mRNA expression analysis of hepatic adaptation to high-fat diets reveals switch from an inflammatory to steatotic transcriptional program.

Radonjic M, de Haan JR, van Erk MJ, van Dijk KW, van den Berg SA, de Groot PJ, Müller M, van Ommen B. Radonjic M, et al. Among authors: de haan jr. PLoS One. 2009 Aug 14;4(8):e6646. doi: 10.1371/journal.pone.0006646. PLoS One. 2009. PMID: 19680557 Free PMC article.

2

Osteo-transcriptomics of human mesenchymal stem cells: accelerated gene expression and osteoblast differentiation induced by vitamin D reveals c-MYC as an enhancer of BMP2-induced osteogenesis.

Piek E, Sleumer LS, van Someren EP, Heuver L, de Haan JR, de Grijs I, Gilissen C, Hendriks JM, van Ravestein-van Os RI, Bauerschmidt S, Dechering KJ, van Zoelen EJ. Piek E, et al. Among authors: de haan jr. Bone. 2010 Mar;46(3):613-27. doi: 10.1016/j.bone.2009.10.024. Epub 2009 Oct 24. Bone. 2010. PMID: 19857615

3

Integrating gene expression and GO classification for PCA by preclustering.

De Haan JR, Piek E, van Schaik RC, de Vlieg J, Bauerschmidt S, Buydens LM, Wehrens R. De Haan JR, et al. BMC Bioinformatics. 2010 Mar 26;11:158. doi: 10.1186/1471-2105-11-158. BMC Bioinformatics. 2010. PMID: 20346140 Free PMC article.

4

Interpretation of ANOVA models for microarray data using PCA.

de Haan JR, Wehrens R, Bauerschmidt S, Piek E, van Schaik RC, Buydens LM. de Haan JR, et al. Bioinformatics. 2007 Jan 15;23(2):184-90. doi: 10.1093/bioinformatics/btl572. Epub 2006 Nov 14. Bioinformatics. 2007. PMID: 17105717

5

Gene expression profiling during adventitious root formation in carnation stem cuttings.

Villacorta-Martín C, Sánchez-García AB, Villanova J, Cano A, van de Rhee M, de Haan J, Acosta M, Passarinho P, Pérez-Pérez JM. Villacorta-Martín C, et al. BMC Genomics. 2015 Oct 14;16:789. doi: 10.1186/s12864-015-2003-5. BMC Genomics. 2015. PMID: 26467528 Free PMC article.

6

Whole transcriptome profiling of the vernalization process in Lilium longiflorum (cultivar White Heaven) bulbs.

Villacorta-Martin C, Núñez de Cáceres González FF, de Haan J, Huijben K, Passarinho P, Lugassi-Ben Hamo M, Zaccai M. Villacorta-Martin C, et al. BMC Genomics. 2015 Jul 28;16(1):550. doi: 10.1186/s12864-015-1675-1. BMC Genomics. 2015. PMID: 26216467 Free PMC article.

7

Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum.

Grandke F, Singh P, Heuven HC, de Haan JR, Metzler D. Grandke F, et al. Among authors: de haan jr. BMC Genomics. 2016 Aug 24;17(1):672. doi: 10.1186/s12864-016-2926-5. BMC Genomics. 2016. PMID: 27554097 Free PMC article.

8

Dissimilarity based Partial Least Squares (DPLS) for genomic prediction from SNPs.

Singh P, Engel J, Jansen J, de Haan J, Buydens LM. Singh P, et al. BMC Genomics. 2016 May 4;17:324. doi: 10.1186/s12864-016-2651-0. BMC Genomics. 2016. PMID: 27142305 Free PMC article.

9

PERGOLA: fast and deterministic linkage mapping of polyploids.

Grandke F, Ranganathan S, van Bers N, de Haan JR, Metzler D. Grandke F, et al. Among authors: de haan jr. BMC Bioinformatics. 2017 Jan 4;18(1):12. doi: 10.1186/s12859-016-1416-8. BMC Bioinformatics. 2017. PMID: 28049428 Free PMC article.

10

PanTools v3: functional annotation, classification and phylogenomics.

Jonkheer EM, van Workum DM, Sheikhizadeh Anari S, Brankovics B, de Haan JR, Berke L, van der Lee TAJ, de Ridder D, Smit S. Jonkheer EM, et al. Among authors: de haan jr. Bioinformatics. 2022 Sep 15;38(18):4403-4405. doi: 10.1093/bioinformatics/btac506. Bioinformatics. 2022. PMID: 35861394 Free PMC article.

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