Abraham P - Search Results

1

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, Banfield JF. Wilkins MJ, et al. Among authors: abraham p. Appl Environ Microbiol. 2009 Oct;75(20):6591-9. doi: 10.1128/AEM.01064-09. Epub 2009 Aug 28. Appl Environ Microbiol. 2009. PMID: 19717633 Free PMC article.

2

Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.

Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF. Denef VJ, et al. Among authors: abraham p. Environ Microbiol. 2009 Feb;11(2):313-25. doi: 10.1111/j.1462-2920.2008.01769.x. Epub 2008 Sep 23. Environ Microbiol. 2009. PMID: 18826438

3

Impact of phenolic substrate and growth temperature on the Arthrobacter chlorophenolicus proteome.

Unell M, Abraham PE, Shah M, Zhang B, Rückert C, VerBerkmoes NC, Jansson JK. Unell M, et al. J Proteome Res. 2009 Apr;8(4):1953-64. doi: 10.1021/pr800897c. J Proteome Res. 2009. PMID: 19714879

4

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system.

Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, Barofsky DF, Giovannoni SJ. Sowell SM, et al. Among authors: abraham pe. ISME J. 2011 May;5(5):856-65. doi: 10.1038/ismej.2010.168. Epub 2010 Nov 11. ISME J. 2011. PMID: 21068774 Free PMC article.

5

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA. Yang X, et al. Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2. Genome Res. 2011. PMID: 21367939 Free PMC article.

6

Defining the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics.

Abraham P, Adams R, Giannone RJ, Kalluri U, Ranjan P, Erickson B, Shah M, Tuskan GA, Hettich RL. Abraham P, et al. J Proteome Res. 2012 Jan 1;11(1):449-60. doi: 10.1021/pr200851y. Epub 2011 Nov 9. J Proteome Res. 2012. PMID: 22003893

7

Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus.

Abraham P, Giannone RJ, Adams RM, Kalluri U, Tuskan GA, Hettich RL. Abraham P, et al. Mol Cell Proteomics. 2013 Jan;12(1):106-19. doi: 10.1074/mcp.M112.022996. Epub 2012 Oct 16. Mol Cell Proteomics. 2013. PMID: 23073815 Free PMC article.

8

Moving away from the reference genome: evaluating a peptide sequencing tagging approach for single amino acid polymorphism identifications in the genus Populus.

Abraham P, Adams RM, Tuskan GA, Hettich RL. Abraham P, et al. J Proteome Res. 2013 Aug 2;12(8):3642-51. doi: 10.1021/pr400192r. Epub 2013 Jul 23. J Proteome Res. 2013. PMID: 23795892

9

Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.

Abraham PE, Giannone RJ, Xiong W, Hettich RL. Abraham PE, et al. Curr Protoc Bioinformatics. 2014 Jun 17;46:13.26.1-13.26.14. doi: 10.1002/0471250953.bi1326s46. Curr Protoc Bioinformatics. 2014. PMID: 24939130

10

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota.

Xiong W, Abraham PE, Li Z, Pan C, Hettich RL. Xiong W, et al. Proteomics. 2015 Oct;15(20):3424-38. doi: 10.1002/pmic.201400571. Epub 2015 May 28. Proteomics. 2015. PMID: 25914197 Free PMC article. Review.

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