Mukherjee S - Search Results

1

Comparative study of gene set enrichment methods.

Abatangelo L, Maglietta R, Distaso A, D'Addabbo A, Creanza TM, Mukherjee S, Ancona N. Abatangelo L, et al. Among authors: mukherjee s. BMC Bioinformatics. 2009 Sep 2;10:275. doi: 10.1186/1471-2105-10-275. BMC Bioinformatics. 2009. PMID: 19725948 Free PMC article.

2

RS-SNP: a random-set method for genome-wide association studies.

D'Addabbo A, Palmieri O, Latiano A, Annese V, Mukherjee S, Ancona N. D'Addabbo A, et al. Among authors: mukherjee s. BMC Genomics. 2011 Mar 30;12:166. doi: 10.1186/1471-2164-12-166. BMC Genomics. 2011. PMID: 21450072 Free PMC article.

3

A comparative study of covariance selection models for the inference of gene regulatory networks.

Stifanelli PF, Creanza TM, Anglani R, Liuzzi VC, Mukherjee S, Schena FP, Ancona N. Stifanelli PF, et al. Among authors: mukherjee s. J Biomed Inform. 2013 Oct;46(5):894-904. doi: 10.1016/j.jbi.2013.07.002. Epub 2013 Jul 20. J Biomed Inform. 2013. PMID: 23876513 Free article.

4

On the reproducibility of results of pathway analysis in genome-wide expression studies of colorectal cancers.

Maglietta R, Distaso A, Piepoli A, Palumbo O, Carella M, D'Addabbo A, Mukherjee S, Ancona N. Maglietta R, et al. Among authors: mukherjee s. J Biomed Inform. 2010 Jun;43(3):397-406. doi: 10.1016/j.jbi.2009.09.005. Epub 2009 Sep 29. J Biomed Inform. 2010. PMID: 19796710 Free article.

5

Discovering genetic variants in Crohn's disease by exploring genomic regions enriched of weak association signals.

D'Addabbo A, Palmieri O, Maglietta R, Latiano A, Mukherjee S, Annese V, Ancona N. D'Addabbo A, et al. Among authors: mukherjee s. Dig Liver Dis. 2011 Aug;43(8):623-31. doi: 10.1016/j.dld.2011.02.010. Epub 2011 Mar 15. Dig Liver Dis. 2011. PMID: 21411385

6

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: mukherjee s. Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940837 Free PMC article.

7

Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.

Edelman E, Porrello A, Guinney J, Balakumaran B, Bild A, Febbo PG, Mukherjee S. Edelman E, et al. Among authors: mukherjee s. Bioinformatics. 2006 Jul 15;22(14):e108-16. doi: 10.1093/bioinformatics/btl231. Bioinformatics. 2006. PMID: 16873460

8

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

Bennett BD, Xiong Q, Mukherjee S, Furey TS. Bennett BD, et al. Among authors: mukherjee s. PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13. PLoS One. 2012. PMID: 23028573 Free PMC article.

9

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Subramanian A, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. doi: 10.1073/pnas.0506580102. Epub 2005 Sep 30. Proc Natl Acad Sci U S A. 2005. PMID: 16199517 Free PMC article.

10

GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data.

Xiong Q, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: mukherjee s. Sci Rep. 2014 Sep 12;4:6347. doi: 10.1038/srep06347. Sci Rep. 2014. PMID: 25213199 Free PMC article.

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