de Figueiredo LF - Search Results

1

Computing the shortest elementary flux modes in genome-scale metabolic networks.

de Figueiredo LF, Podhorski A, Rubio A, Kaleta C, Beasley JE, Schuster S, Planes FJ. de Figueiredo LF, et al. Bioinformatics. 2009 Dec 1;25(23):3158-65. doi: 10.1093/bioinformatics/btp564. Epub 2009 Sep 30. Bioinformatics. 2009. PMID: 19793869

2

Exploring metabolic pathways in genome-scale networks via generating flux modes.

Rezola A, de Figueiredo LF, Brock M, Pey J, Podhorski A, Wittmann C, Schuster S, Bockmayr A, Planes FJ. Rezola A, et al. Among authors: de figueiredo lf. Bioinformatics. 2011 Feb 15;27(4):534-40. doi: 10.1093/bioinformatics/btq681. Epub 2010 Dec 10. Bioinformatics. 2011. PMID: 21149278

3

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns.

Kaleta C, de Figueiredo LF, Schuster S. Kaleta C, et al. Among authors: de figueiredo lf. Genome Res. 2009 Oct;19(10):1872-83. doi: 10.1101/gr.090639.108. Epub 2009 Jun 18. Genome Res. 2009. PMID: 19541909 Free PMC article.

4

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

de Figueiredo LF, Schuster S, Kaleta C, Fell DA. de Figueiredo LF, et al. Bioinformatics. 2008 Nov 15;24(22):2615-21. doi: 10.1093/bioinformatics/btn500. Epub 2008 Sep 19. Bioinformatics. 2008. Corrected and republished in: Bioinformatics. 2009 Jan 1;25(1):152-8. doi: 10.1093/bioinformatics/btn621 PMID: 18806269 Corrected and republished.

5

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

de Figueiredo LF, Schuster S, Kaleta C, Fell DA. de Figueiredo LF, et al. Bioinformatics. 2009 Jan 1;25(1):152-8. doi: 10.1093/bioinformatics/btn621. Bioinformatics. 2009. PMID: 19117076

6

Predicting novel pathways in genome-scale metabolic networks.

Schuster S, de Figueiredo LF, Kaleta C. Schuster S, et al. Among authors: de figueiredo lf. Biochem Soc Trans. 2010 Oct;38(5):1202-5. doi: 10.1042/BST0381202. Biochem Soc Trans. 2010. PMID: 20863284

7

Selection of human tissue-specific elementary flux modes using gene expression data.

Rezola A, Pey J, de Figueiredo LF, Podhorski A, Schuster S, Rubio A, Planes FJ. Rezola A, et al. Among authors: de figueiredo lf. Bioinformatics. 2013 Aug 15;29(16):2009-16. doi: 10.1093/bioinformatics/btt328. Epub 2013 Jun 6. Bioinformatics. 2013. PMID: 23742984

8

Detecting structural invariants in biological reaction networks.

Behre J, de Figueiredo LF, Schuster S, Kaleta C. Behre J, et al. Among authors: de figueiredo lf. Methods Mol Biol. 2012;804:377-407. doi: 10.1007/978-1-61779-361-5_20. Methods Mol Biol. 2012. PMID: 22144164 Review.

9

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.

de Figueiredo LF, Schuster S, Kaleta C, Fell DA. de Figueiredo LF, et al. Bioinformatics. 2009 Dec 15;25(24):3330-1. doi: 10.1093/bioinformatics/btp591. Epub 2009 Oct 13. Bioinformatics. 2009. PMID: 19825797 No abstract available.

10

Special issue: integration of OMICs datasets into metabolic pathway analysis.

Kaleta C, de Figueiredo LF, Heiland I, Klamt S, Schuster S. Kaleta C, et al. Among authors: de figueiredo lf. Biosystems. 2011 Aug;105(2):107-8. doi: 10.1016/j.biosystems.2011.05.008. Epub 2011 May 18. Biosystems. 2011. PMID: 21619911 No abstract available.

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