Singhal M - Search Results

1

Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling.

Qureshi AH, Chaoji V, Maiguel D, Faridi MH, Barth CJ, Salem SM, Singhal M, Stoub D, Krastins B, Ogihara M, Zaki MJ, Gupta V. Qureshi AH, et al. Among authors: singhal m. PLoS One. 2009 Oct 27;4(10):e7627. doi: 10.1371/journal.pone.0007627. PLoS One. 2009. PMID: 19859549 Free PMC article.

2

Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.

Taylor RC, Acquaah-Mensah G, Singhal M, Malhotra D, Biswal S. Taylor RC, et al. Among authors: singhal m. PLoS Comput Biol. 2008 Aug 29;4(8):e1000166. doi: 10.1371/journal.pcbi.1000166. PLoS Comput Biol. 2008. PMID: 18769717 Free PMC article.

3

Biological Network Inference and analysis using SEBINI and CABIN.

Taylor R, Singhal M. Taylor R, et al. Among authors: singhal m. Methods Mol Biol. 2009;541:551-76. doi: 10.1007/978-1-59745-243-4_24. Methods Mol Biol. 2009. PMID: 19381531 Review.

4

A network inference workflow applied to virulence-related processes in Salmonella typhimurium.

Taylor RC, Singhal M, Weller J, Khoshnevis S, Shi L, McDermott J. Taylor RC, et al. Among authors: singhal m. Ann N Y Acad Sci. 2009 Mar;1158:143-58. doi: 10.1111/j.1749-6632.2008.03762.x. Ann N Y Acad Sci. 2009. PMID: 19348639

5

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS. Taylor RC, et al. Among authors: singhal m. Int J Data Min Bioinform. 2009;3(4):409-30. doi: 10.1504/ijdmb.2009.029204. Int J Data Min Bioinform. 2009. PMID: 20052905

6

CABIN: collective analysis of biological interaction networks.

Singhal M, Domico K. Singhal M, et al. Comput Biol Chem. 2007 Jun;31(3):222-5. doi: 10.1016/j.compbiolchem.2007.03.006. Epub 2007 Mar 30. Comput Biol Chem. 2007. PMID: 17500038

7

Enabling proteomics discovery through visual analysis. The peptide permutation and protein prediction tool.

Havre SL, Singhal M, Payne DA, Lipton MS, Webb-Robertson BJ. Havre SL, et al. Among authors: singhal m. IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):50-7. doi: 10.1109/memb.2005.1436460. IEEE Eng Med Biol Mag. 2005. PMID: 15971841

8

Machine learning based prediction for peptide drift times in ion mobility spectrometry.

Shah AR, Agarwal K, Baker ES, Singhal M, Mayampurath AM, Ibrahim YM, Kangas LJ, Monroe ME, Zhao R, Belov ME, Anderson GA, Smith RD. Shah AR, et al. Among authors: singhal m. Bioinformatics. 2010 Jul 1;26(13):1601-7. doi: 10.1093/bioinformatics/btq245. Epub 2010 May 21. Bioinformatics. 2010. PMID: 20495001 Free PMC article.

9

PQuad--a visual analysis platform for proteomic data exploration of microbial organisms.

Webb-Robertson BJ, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL. Webb-Robertson BJ, et al. Among authors: singhal m. Bioinformatics. 2007 Jul 1;23(13):1705-7. doi: 10.1093/bioinformatics/btm132. Epub 2007 May 5. Bioinformatics. 2007. PMID: 17483503

10

Separating the drivers from the driven: Integrative network and pathway approaches aid identification of disease biomarkers from high-throughput data.

McDermott JE, Costa M, Janszen D, Singhal M, Tilton SC. McDermott JE, et al. Among authors: singhal m. Dis Markers. 2010;28(4):253-66. doi: 10.3233/DMA-2010-0695. Dis Markers. 2010. PMID: 20534910 Free PMC article. Review.

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