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MicroRazerS: rapid alignment of small RNA reads.
Emde AK, Grunert M, Weese D, Reinert K, Sperling SR. Emde AK, et al. Among authors: weese d. Bioinformatics. 2010 Jan 1;26(1):123-4. doi: 10.1093/bioinformatics/btp601. Epub 2009 Oct 29. Bioinformatics. 2010. PMID: 19880369
Segment-based multiple sequence alignment.
Rausch T, Emde AK, Weese D, Döring A, Notredame C, Reinert K. Rausch T, et al. Among authors: weese d. Bioinformatics. 2008 Aug 15;24(16):i187-92. doi: 10.1093/bioinformatics/btn281. Bioinformatics. 2008. PMID: 18689823
RazerS--fast read mapping with sensitivity control.
Weese D, Emde AK, Rausch T, Döring A, Reinert K. Weese D, et al. Genome Res. 2009 Sep;19(9):1646-54. doi: 10.1101/gr.088823.108. Epub 2009 Jul 10. Genome Res. 2009. PMID: 19592482 Free PMC article.
STELLAR: fast and exact local alignments.
Kehr B, Weese D, Reinert K. Kehr B, et al. Among authors: weese d. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S15. doi: 10.1186/1471-2105-12-S9-S15. BMC Bioinformatics. 2011. PMID: 22151882 Free PMC article.
RazerS 3: faster, fully sensitive read mapping.
Weese D, Holtgrewe M, Reinert K. Weese D, et al. Bioinformatics. 2012 Oct 15;28(20):2592-9. doi: 10.1093/bioinformatics/bts505. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923295
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