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Page 1
Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay.
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C. Zhang J, et al. Among authors: abadia e. J Med Microbiol. 2010 Mar;59(Pt 3):285-294. doi: 10.1099/jmm.0.016949-0. Epub 2009 Dec 3. J Med Microbiol. 2010. PMID: 19959631
The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes.
Abadia E, Zhang J, Ritacco V, Kremer K, Ruimy R, Rigouts L, Gomes HM, Elias AR, Fauville-Dufaux M, Stoffels K, Rasolofo-Razanamparany V, Garcia de Viedma D, Herranz M, Al-Hajoj S, Rastogi N, Garzelli C, Tortoli E, Suffys PN, van Soolingen D, Refrégier G, Sola C. Abadia E, et al. BMC Infect Dis. 2011 Apr 28;11:110. doi: 10.1186/1471-2334-11-110. BMC Infect Dis. 2011. PMID: 21527037 Free PMC article.
Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.
Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C. Refrégier G, et al. Among authors: abadia e. Infect Genet Evol. 2016 Nov;45:461-473. doi: 10.1016/j.meegid.2016.10.009. Epub 2016 Oct 14. Infect Genet Evol. 2016. PMID: 27746295
Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates.
Sengstake S, Bablishvili N, Schuitema A, Bzekalava N, Abadia E, de Beer J, Tadumadze N, Akhalaia M, Tuin K, Tukvadze N, Aspindzelashvili R, Bachiyska E, Panaiotov S, Sola C, van Soolingen D, Klatser P, Anthony R, Bergval I. Sengstake S, et al. Among authors: abadia e. BMC Genomics. 2014 Jul 7;15(1):572. doi: 10.1186/1471-2164-15-572. BMC Genomics. 2014. PMID: 25001491 Free PMC article.
Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array.
Bergval I, Sengstake S, Brankova N, Levterova V, Abadía E, Tadumaze N, Bablishvili N, Akhalaia M, Tuin K, Schuitema A, Panaiotov S, Bachiyska E, Kantardjiev T, de Zwaan R, Schürch A, van Soolingen D, van 't Hoog A, Cobelens F, Aspindzelashvili R, Sola C, Klatser P, Anthony R. Bergval I, et al. Among authors: abadia e. PLoS One. 2012;7(8):e43240. doi: 10.1371/journal.pone.0043240. Epub 2012 Aug 20. PLoS One. 2012. PMID: 22916230 Free PMC article.
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