Greenfield A - Search Results

1

The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models.

Madar A, Greenfield A, Ostrer H, Vanden-Eijnden E, Bonneau R. Madar A, et al. Among authors: greenfield a. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5448-51. doi: 10.1109/IEMBS.2009.5334018. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964678

2

DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator.

Madar A, Greenfield A, Vanden-Eijnden E, Bonneau R. Madar A, et al. Among authors: greenfield a. PLoS One. 2010 Mar 22;5(3):e9803. doi: 10.1371/journal.pone.0009803. PLoS One. 2010. PMID: 20339551 Free PMC article.

3

DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models.

Greenfield A, Madar A, Ostrer H, Bonneau R. Greenfield A, et al. PLoS One. 2010 Oct 25;5(10):e13397. doi: 10.1371/journal.pone.0013397. PLoS One. 2010. PMID: 21049040 Free PMC article.

4

Integrated inference and analysis of regulatory networks from multi-level measurements.

Poultney CS, Greenfield A, Bonneau R. Poultney CS, et al. Among authors: greenfield a. Methods Cell Biol. 2012;110:19-56. doi: 10.1016/B978-0-12-388403-9.00002-3. Methods Cell Biol. 2012. PMID: 22482944 Free PMC article. Review.

5

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks.

Greenfield A, Hafemeister C, Bonneau R. Greenfield A, et al. Bioinformatics. 2013 Apr 15;29(8):1060-7. doi: 10.1093/bioinformatics/btt099. Epub 2013 Mar 21. Bioinformatics. 2013. PMID: 23525069 Free PMC article.

6

An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.

Arrieta-Ortiz ML, Hafemeister C, Bate AR, Chu T, Greenfield A, Shuster B, Barry SN, Gallitto M, Liu B, Kacmarczyk T, Santoriello F, Chen J, Rodrigues CD, Sato T, Rudner DZ, Driks A, Bonneau R, Eichenberger P. Arrieta-Ortiz ML, et al. Among authors: greenfield a. Mol Syst Biol. 2015 Nov 17;11(11):839. doi: 10.15252/msb.20156236. Mol Syst Biol. 2015. PMID: 26577401 Free PMC article.

7

A validated regulatory network for Th17 cell specification.

Ciofani M, Madar A, Galan C, Sellars M, Mace K, Pauli F, Agarwal A, Huang W, Parkhurst CN, Muratet M, Newberry KM, Meadows S, Greenfield A, Yang Y, Jain P, Kirigin FK, Birchmeier C, Wagner EF, Murphy KM, Myers RM, Bonneau R, Littman DR. Ciofani M, et al. Among authors: greenfield a. Cell. 2012 Oct 12;151(2):289-303. doi: 10.1016/j.cell.2012.09.016. Epub 2012 Sep 25. Cell. 2012. PMID: 23021777 Free PMC article.

8

Wisdom of crowds for robust gene network inference.

Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium; Kellis M, Collins JJ, Stolovitzky G. Marbach D, et al. Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016. Nat Methods. 2012. PMID: 22796662 Free PMC article.

9

A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells.

Imberg-Kazdan K, Ha S, Greenfield A, Poultney CS, Bonneau R, Logan SK, Garabedian MJ. Imberg-Kazdan K, et al. Among authors: greenfield a. Genome Res. 2013 Apr;23(4):581-91. doi: 10.1101/gr.144774.112. Epub 2013 Feb 12. Genome Res. 2013. PMID: 23403032 Free PMC article.

10

Androgen receptor antagonism by divalent ethisterone conjugates in castrate-resistant prostate cancer cells.

Levine PM, Lee E, Greenfield A, Bonneau R, Logan SK, Garabedian MJ, Kirshenbaum K. Levine PM, et al. Among authors: greenfield a. ACS Chem Biol. 2012 Oct 19;7(10):1693-701. doi: 10.1021/cb300332w. Epub 2012 Aug 7. ACS Chem Biol. 2012. PMID: 22871957 Free PMC article.

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