Pham TV - Search Results

1

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics.

Pham TV, Piersma SR, Warmoes M, Jimenez CR. Pham TV, et al. Bioinformatics. 2010 Feb 1;26(3):363-9. doi: 10.1093/bioinformatics/btp677. Epub 2009 Dec 9. Bioinformatics. 2010. PMID: 20007255

2

Support vector machine approach to separate control and breast cancer serum samples.

Pham TV, van de Wiel MA, Jimenez CR. Pham TV, et al. Stat Appl Genet Mol Biol. 2008;7(2):Article11. doi: 10.2202/1544-6115.1355. Epub 2008 Feb 21. Stat Appl Genet Mol Biol. 2008. PMID: 18312216

3

iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype.

Rajcevic U, Petersen K, Knol JC, Loos M, Bougnaud S, Klychnikov O, Li KW, Pham TV, Wang J, Miletic H, Peng Z, Bjerkvig R, Jimenez CR, Niclou SP. Rajcevic U, et al. Among authors: pham tv. Mol Cell Proteomics. 2009 Nov;8(11):2595-612. doi: 10.1074/mcp.M900124-MCP200. Epub 2009 Aug 12. Mol Cell Proteomics. 2009. PMID: 19674965 Free PMC article.

4

Prediction of outcome of non-small cell lung cancer patients treated with chemotherapy and bortezomib by time-course MALDI-TOF-MS serum peptide profiling.

Voortman J, Pham TV, Knol JC, Giaccone G, Jimenez CR. Voortman J, et al. Among authors: pham tv. Proteome Sci. 2009 Sep 3;7:34. doi: 10.1186/1477-5956-7-34. Proteome Sci. 2009. PMID: 19728888 Free PMC article.

5

Comparative protein profiling reveals minichromosome maintenance (MCM) proteins as novel potential tumor markers for meningiomas.

Saydam O, Senol O, Schaaij-Visser TB, Pham TV, Piersma SR, Stemmer-Rachamimov AO, Wurdinger T, Peerdeman SM, Jimenez CR. Saydam O, et al. Among authors: pham tv. J Proteome Res. 2010 Jan;9(1):485-94. doi: 10.1021/pr900834h. J Proteome Res. 2010. PMID: 19877719 Free PMC article.

6

Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum.

Piersma SR, Fiedler U, Span S, Lingnau A, Pham TV, Hoffmann S, Kubbutat MH, Jiménez CR. Piersma SR, et al. Among authors: pham tv. J Proteome Res. 2010 Apr 5;9(4):1913-22. doi: 10.1021/pr901072h. J Proteome Res. 2010. PMID: 20085282

7

Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression.

Albrethsen J, Knol JC, Piersma SR, Pham TV, de Wit M, Mongera S, Carvalho B, Verheul HM, Fijneman RJ, Meijer GA, Jimenez CR. Albrethsen J, et al. Among authors: pham tv. Mol Cell Proteomics. 2010 May;9(5):988-1005. doi: 10.1074/mcp.M900546-MCP200. Epub 2010 Jan 20. Mol Cell Proteomics. 2010. PMID: 20089989 Free PMC article.

8

High-throughput and targeted in-depth mass spectrometry-based approaches for biofluid profiling and biomarker discovery.

Jimenez CR, Piersma S, Pham TV. Jimenez CR, et al. Among authors: pham tv. Biomark Med. 2007 Dec;1(4):541-65. doi: 10.2217/17520363.1.4.541. Biomark Med. 2007. PMID: 20477373

9

Endogeneous peptide profiling of cerebrospinal fluid by MALDI-TOF mass spectrometry: Optimization of magnetic bead-based peptide capture and analysis of preanalytical variables.

Jimenez CR, Koel-Simmelink M, Pham TV, van der Voort L, Teunissen CE. Jimenez CR, et al. Among authors: pham tv. Proteomics Clin Appl. 2007 Nov;1(11):1385-92. doi: 10.1002/prca.200700330. Epub 2007 Oct 16. Proteomics Clin Appl. 2007. PMID: 21136638

10

Identification of biomarkers for diagnosis and progression of MS by MALDI-TOF mass spectrometry.

Teunissen CE, Koel-Simmelink MJ, Pham TV, Knol JC, Khalil M, Trentini A, Killestein J, Nielsen J, Vrenken H, Popescu V, Dijkstra CD, Jimenez CR. Teunissen CE, et al. Among authors: pham tv. Mult Scler. 2011 Jul;17(7):838-50. doi: 10.1177/1352458511399614. Epub 2011 Apr 19. Mult Scler. 2011. PMID: 21505015

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