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The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F. Angly FE, et al. Among authors: willner d. PLoS Comput Biol. 2009 Dec;5(12):e1000593. doi: 10.1371/journal.pcbi.1000593. Epub 2009 Dec 11. PLoS Comput Biol. 2009. PMID: 20011103 Free PMC article.
Viral and microbial community dynamics in four aquatic environments.
Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F. Rodriguez-Brito B, et al. Among authors: willner d. ISME J. 2010 Jun;4(6):739-51. doi: 10.1038/ismej.2010.1. Epub 2010 Feb 11. ISME J. 2010. PMID: 20147985 Free article.
Grinder: a versatile amplicon and shotgun sequence simulator.
Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW. Angly FE, et al. Among authors: willner d. Nucleic Acids Res. 2012 Jul;40(12):e94. doi: 10.1093/nar/gks251. Epub 2012 Mar 19. Nucleic Acids Res. 2012. PMID: 22434876 Free PMC article.
Oxygen minimum zones harbour novel viral communities with low diversity.
Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA. Cassman N, et al. Among authors: willner d. Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5. Environ Microbiol. 2012. PMID: 23039259
79 results