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New protein structure model evaluation methods that include a side-chain consensus score for the protein modeling.
Kanou K, Hirata T, Terashi G, Umeyama H, Takeda-Shitaka M. Kanou K, et al. Among authors: terashi g. Chem Pharm Bull (Tokyo). 2010 Feb;58(2):180-90. doi: 10.1248/cpb.58.180. Chem Pharm Bull (Tokyo). 2010. PMID: 20118576 Free article.
When the SEC method was used in combination with the 3D-Jury method (3DJ+SEC), models were selected with improved quality both in the Calpha backbone and side-chain atom positions. Moreover, the CIRCLE (CCL) method (Terashi G. et al., Proteins, 69 (Suppl. 8), 98-107 …
When the SEC method was used in combination with the 3D-Jury method (3DJ+SEC), models were selected with improved quality both in the Calpha …
Protein structure prediction in CASP6 using CHIMERA and FAMS.
Takeda-Shitaka M, Terashi G, Takaya D, Kanou K, Iwadate M, Umeyama H. Takeda-Shitaka M, et al. Among authors: terashi g. Proteins. 2005;61 Suppl 7:122-127. doi: 10.1002/prot.20728. Proteins. 2005. PMID: 16187353
Bioinformatics based Ligand-Docking and in-silico screening.
Takaya D, Takeda-Shitaka M, Terashi G, Kanou K, Iwadate M, Umeyama H. Takaya D, et al. Among authors: terashi g. Chem Pharm Bull (Tokyo). 2008 May;56(5):742-4. doi: 10.1248/cpb.56.742. Chem Pharm Bull (Tokyo). 2008. PMID: 18451572 Free article.
61 results