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Small Molecule Subgraph Detector (SMSD) toolkit.
Rahman SA, Bashton M, Holliday GL, Schrader R, Thornton JM. Rahman SA, et al. Among authors: holliday gl. J Cheminform. 2009 Aug 10;1(1):12. doi: 10.1186/1758-2946-1-12. J Cheminform. 2009. PMID: 20298518 Free PMC article.
The CoFactor database: organic cofactors in enzyme catalysis.
Fischer JD, Holliday GL, Thornton JM. Fischer JD, et al. Among authors: holliday gl. Bioinformatics. 2010 Oct 1;26(19):2496-7. doi: 10.1093/bioinformatics/btq442. Epub 2010 Aug 2. Bioinformatics. 2010. PMID: 20679331 Free PMC article.
The EBI enzyme portal.
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C. Alcántara R, et al. Among authors: holliday gl. Nucleic Acids Res. 2013 Jan;41(Database issue):D773-80. doi: 10.1093/nar/gks1112. Epub 2012 Nov 21. Nucleic Acids Res. 2013. PMID: 23175605 Free PMC article.
Reaction Decoder Tool (RDT): extracting features from chemical reactions.
Rahman SA, Torrance G, Baldacci L, Martínez Cuesta S, Fenninger F, Gopal N, Choudhary S, May JW, Holliday GL, Steinbeck C, Thornton JM. Rahman SA, et al. Among authors: holliday gl. Bioinformatics. 2016 Jul 1;32(13):2065-6. doi: 10.1093/bioinformatics/btw096. Epub 2016 Feb 22. Bioinformatics. 2016. PMID: 27153692 Free PMC article.
38 results