Sugahara J - Search Results

1

Large-scale tRNA intron transposition in the archaeal order Thermoproteales represents a novel mechanism of intron gain.

Fujishima K, Sugahara J, Tomita M, Kanai A. Fujishima K, et al. Among authors: sugahara j. Mol Biol Evol. 2010 Oct;27(10):2233-43. doi: 10.1093/molbev/msq111. Epub 2010 Apr 29. Mol Biol Evol. 2010. PMID: 20430862

2

SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level.

Sugahara J, Yachie N, Sekine Y, Soma A, Matsui M, Tomita M, Kanai A. Sugahara J, et al. In Silico Biol. 2006;6(5):411-8. In Silico Biol. 2006. PMID: 17274770

3

In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.

Sugahara J, Yachie N, Arakawa K, Tomita M. Sugahara J, et al. RNA. 2007 May;13(5):671-81. doi: 10.1261/rna.309507. Epub 2007 Mar 16. RNA. 2007. PMID: 17369313 Free PMC article.

4

Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves.

Fujishima K, Sugahara J, Tomita M, Kanai A. Fujishima K, et al. Among authors: sugahara j. PLoS One. 2008 Feb 20;3(2):e1622. doi: 10.1371/journal.pone.0001622. PLoS One. 2008. PMID: 18286179 Free PMC article.

5

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A. Sugahara J, et al. Mol Biol Evol. 2008 Dec;25(12):2709-16. doi: 10.1093/molbev/msn216. Epub 2008 Oct 1. Mol Biol Evol. 2008. PMID: 18832079

6

Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea.

Fujishima K, Sugahara J, Kikuta K, Hirano R, Sato A, Tomita M, Kanai A. Fujishima K, et al. Among authors: sugahara j. Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2683-7. doi: 10.1073/pnas.0808246106. Epub 2009 Feb 3. Proc Natl Acad Sci U S A. 2009. PMID: 19190180 Free PMC article.

7

Disrupted tRNA gene diversity and possible evolutionary scenarios.

Sugahara J, Fujishima K, Morita K, Tomita M, Kanai A. Sugahara J, et al. J Mol Evol. 2009 Nov;69(5):497-504. doi: 10.1007/s00239-009-9294-6. Epub 2009 Oct 14. J Mol Evol. 2009. PMID: 19826747

8

Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes.

Maruyama S, Sugahara J, Kanai A, Nozaki H. Maruyama S, et al. Among authors: sugahara j. Mol Biol Evol. 2010 May;27(5):1070-6. doi: 10.1093/molbev/msp313. Epub 2009 Dec 18. Mol Biol Evol. 2010. PMID: 20022888

9

[Tri-split tRNA: a transfer RNA encoded on three separate genes found in hyperthermoacidophilic archaeon Caldivirga maquilingensis].

Fujishima K, Sugahara J, Kanai A. Fujishima K, et al. Among authors: sugahara j. Seikagaku. 2010 Jul;82(7):606-12. Seikagaku. 2010. PMID: 20715572 Review. Japanese. No abstract available.

10

A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. Fujishima K, et al. Among authors: sugahara j. Nucleic Acids Res. 2011 Dec;39(22):9695-704. doi: 10.1093/nar/gkr692. Epub 2011 Aug 31. Nucleic Acids Res. 2011. PMID: 21880595 Free PMC article.

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