Nikkilä J - Search Results

1

Multivariate multi-way analysis of multi-source data.

Huopaniemi I, Suvitaival T, Nikkilä J, Oresic M, Kaski S. Huopaniemi I, et al. Among authors: nikkila j. Bioinformatics. 2010 Jun 15;26(12):i391-8. doi: 10.1093/bioinformatics/btq174. Bioinformatics. 2010. PMID: 20529933 Free PMC article.

2

Analysis and visualization of gene expression data using self-organizing maps.

Nikkilä J, Törönen P, Kaski S, Venna J, Castrén E, Wong G. Nikkilä J, et al. Neural Netw. 2002 Oct-Nov;15(8-9):953-66. doi: 10.1016/s0893-6080(02)00070-9. Neural Netw. 2002. PMID: 12416686

3

Trustworthiness and metrics in visualizing similarity of gene expression.

Kaski S, Nikkilä J, Oja M, Venna J, Törönen P, Castrén E. Kaski S, et al. Among authors: nikkila j. BMC Bioinformatics. 2003 Oct 13;4:48. doi: 10.1186/1471-2105-4-48. BMC Bioinformatics. 2003. PMID: 14552657 Free PMC article.

4

Exploratory modeling of yeast stress response and its regulation with gCCA and associative clustering.

Nikkilä J, Roos C, Savia E, Kaski S. Nikkilä J, et al. Int J Neural Syst. 2005 Aug;15(4):237-46. doi: 10.1142/S0129065705000220. Int J Neural Syst. 2005. PMID: 16187400 Free article.

5

Associative clustering for exploring dependencies between functional genomics data sets.

Kaski S, Nikkilä J, Sinkkonen J, Lahti L, Knuuttila JE, Roos C. Kaski S, et al. Among authors: nikkila j. IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):203-16. doi: 10.1109/TCBB.2005.32. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044184

6

Gender-dependent progression of systemic metabolic states in early childhood.

Nikkilä J, Sysi-Aho M, Ermolov A, Seppänen-Laakso T, Simell O, Kaski S, Oresic M. Nikkilä J, et al. Mol Syst Biol. 2008;4:197. doi: 10.1038/msb.2008.34. Epub 2008 Jun 3. Mol Syst Biol. 2008. PMID: 18523432 Free PMC article.

7

Metabolic regulation in progression to autoimmune diabetes.

Sysi-Aho M, Ermolov A, Gopalacharyulu PV, Tripathi A, Seppänen-Laakso T, Maukonen J, Mattila I, Ruohonen ST, Vähätalo L, Yetukuri L, Härkönen T, Lindfors E, Nikkilä J, Ilonen J, Simell O, Saarela M, Knip M, Kaski S, Savontaus E, Orešič M. Sysi-Aho M, et al. Among authors: nikkila j. PLoS Comput Biol. 2011 Oct;7(10):e1002257. doi: 10.1371/journal.pcbi.1002257. Epub 2011 Oct 27. PLoS Comput Biol. 2011. PMID: 22046124 Free PMC article.

8

Advanced approaches to characterize the human intestinal microbiota by computational meta-analysis.

Nikkilä J, de Vos WM. Nikkilä J, et al. J Clin Gastroenterol. 2010 Sep;44 Suppl 1:S2-5. doi: 10.1097/MCG.0b013e3181e5018f. J Clin Gastroenterol. 2010. PMID: 20616744

9

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.

Jalanka-Tuovinen J, Salonen A, Nikkilä J, Immonen O, Kekkonen R, Lahti L, Palva A, de Vos WM. Jalanka-Tuovinen J, et al. Among authors: nikkila j. PLoS One. 2011;6(7):e23035. doi: 10.1371/journal.pone.0023035. Epub 2011 Jul 28. PLoS One. 2011. PMID: 21829582 Free PMC article. Clinical Trial.

10

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions.

Kolmeder CA, de Been M, Nikkilä J, Ritamo I, Mättö J, Valmu L, Salojärvi J, Palva A, Salonen A, de Vos WM. Kolmeder CA, et al. Among authors: nikkila j. PLoS One. 2012;7(1):e29913. doi: 10.1371/journal.pone.0029913. Epub 2012 Jan 18. PLoS One. 2012. PMID: 22279554 Free PMC article.

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