Laurila K - Search Results

1

Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.

Elo LL, Järvenpää H, Tuomela S, Raghav S, Ahlfors H, Laurila K, Gupta B, Lund RJ, Tahvanainen J, Hawkins RD, Oresic M, Lähdesmäki H, Rasool O, Rao KV, Aittokallio T, Lahesmaa R. Elo LL, et al. Among authors: laurila k. Immunity. 2010 Jun 25;32(6):852-62. doi: 10.1016/j.immuni.2010.06.011. Immunity. 2010. PMID: 20620947 Free article.

2

Systematic analysis of disease-related regulatory mutation classes reveals distinct effects on transcription factor binding.

Laurila K, Lähdesmäki H. Laurila K, et al. In Silico Biol. 2009;9(4):209-24. In Silico Biol. 2009. PMID: 20109151

3

Identification of early gene expression changes during human Th17 cell differentiation.

Tuomela S, Salo V, Tripathi SK, Chen Z, Laurila K, Gupta B, Äijö T, Oikari L, Stockinger B, Lähdesmäki H, Lahesmaa R. Tuomela S, et al. Among authors: laurila k. Blood. 2012 Jun 7;119(23):e151-60. doi: 10.1182/blood-2012-01-407528. Epub 2012 Apr 27. Blood. 2012. PMID: 22544700 Free article.

4

A protein-protein interaction guided method for competitive transcription factor binding improves target predictions.

Laurila K, Yli-Harja O, Lähdesmäki H. Laurila K, et al. Nucleic Acids Res. 2009 Dec;37(22):e146. doi: 10.1093/nar/gkp789. Nucleic Acids Res. 2009. PMID: 19786498 Free PMC article.

5

Continuous hypoxic culturing of human embryonic stem cells enhances SSEA-3 and MYC levels.

Närvä E, Pursiheimo JP, Laiho A, Rahkonen N, Emani MR, Viitala M, Laurila K, Sahla R, Lund R, Lähdesmäki H, Jaakkola P, Lahesmaa R. Närvä E, et al. Among authors: laurila k. PLoS One. 2013 Nov 13;8(11):e78847. doi: 10.1371/journal.pone.0078847. eCollection 2013. PLoS One. 2013. PMID: 24236059 Free PMC article.

6

A linear model for transcription factor binding affinity prediction in protein binding microarrays.

Annala M, Laurila K, Lähdesmäki H, Nykter M. Annala M, et al. Among authors: laurila k. PLoS One. 2011;6(5):e20059. doi: 10.1371/journal.pone.0020059. Epub 2011 May 26. PLoS One. 2011. PMID: 21637853 Free PMC article.

7

Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells.

Laurila K, Autio R, Kong L, Närvä E, Hussein S, Otonkoski T, Lahesmaa R, Lähdesmäki H. Laurila K, et al. BioData Min. 2014 Dec 13;7(1):32. doi: 10.1186/s13040-014-0032-2. eCollection 2014. BioData Min. 2014. PMID: 25649046 Free PMC article.

8

ESTOOLS Data@Hand: human stem cell gene expression resource.

Kong L, Aho KL, Granberg K, Lund R, Järvenpää L, Seppälä J, Gokhale P, Leinonen K, Hahne L, Mäkelä J, Laurila K, Pukkila H, Närvä E, Yli-Harja O, Andrews PW, Nykter M, Lahesmaa R, Roos C, Autio R. Kong L, et al. Among authors: laurila k. Nat Methods. 2013 Sep;10(9):814-5. doi: 10.1038/nmeth.2576. Nat Methods. 2013. PMID: 23985726 No abstract available.

9

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium; Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR. Weirauch MT, et al. Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354101 Free PMC article.

10

A beta-mixture model for dimensionality reduction, sample classification and analysis.

Laurila K, Oster B, Andersen CL, Lamy P, Orntoft T, Yli-Harja O, Wiuf C. Laurila K, et al. BMC Bioinformatics. 2011 May 27;12:215. doi: 10.1186/1471-2105-12-215. BMC Bioinformatics. 2011. PMID: 21619656 Free PMC article.

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