Ramsey SA - Search Results

1

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites.

Ramsey SA, Knijnenburg TA, Kennedy KA, Zak DE, Gilchrist M, Gold ES, Johnson CD, Lampano AE, Litvak V, Navarro G, Stolyar T, Aderem A, Shmulevich I. Ramsey SA, et al. Bioinformatics. 2010 Sep 1;26(17):2071-5. doi: 10.1093/bioinformatics/btq405. Epub 2010 Jul 27. Bioinformatics. 2010. PMID: 20663846 Free PMC article.

2

A method for estimating stochastic noise in large genetic regulatory networks.

Orrell D, Ramsey S, de Atauri P, Bolouri H. Orrell D, et al. Bioinformatics. 2005 Jan 15;21(2):208-17. doi: 10.1093/bioinformatics/bth479. Epub 2004 Aug 19. Bioinformatics. 2005. PMID: 15319259

3

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.

Ramsey SA, Klemm SL, Zak DE, Kennedy KA, Thorsson V, Li B, Gilchrist M, Gold ES, Johnson CD, Litvak V, Navarro G, Roach JC, Rosenberger CM, Rust AG, Yudkovsky N, Aderem A, Shmulevich I. Ramsey SA, et al. PLoS Comput Biol. 2008 Mar 21;4(3):e1000021. doi: 10.1371/journal.pcbi.1000021. PLoS Comput Biol. 2008. PMID: 18369420 Free PMC article.

4

Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform.

Taylor RJ, Falconnet D, Niemistö A, Ramsey SA, Prinz S, Shmulevich I, Galitski T, Hansen CL. Taylor RJ, et al. Among authors: ramsey sa. Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3758-63. doi: 10.1073/pnas.0813416106. Epub 2009 Feb 17. Proc Natl Acad Sci U S A. 2009. PMID: 19223588 Free PMC article.

5

Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals.

Litvak V, Ramsey SA, Rust AG, Zak DE, Kennedy KA, Lampano AE, Nykter M, Shmulevich I, Aderem A. Litvak V, et al. Among authors: ramsey sa. Nat Immunol. 2009 Apr;10(4):437-43. doi: 10.1038/ni.1721. Epub 2009 Mar 8. Nat Immunol. 2009. PMID: 19270711 Free PMC article.

6

A systems biology approach to understanding atherosclerosis.

Ramsey SA, Gold ES, Aderem A. Ramsey SA, et al. EMBO Mol Med. 2010 Mar;2(3):79-89. doi: 10.1002/emmm.201000063. EMBO Mol Med. 2010. PMID: 20201031 Free PMC article. Review.

7

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.

Burdick DB, Cavnor CC, Handcock J, Killcoyne S, Lin J, Marzolf B, Ramsey SA, Rovira H, Bressler R, Shmulevich I, Boyle J. Burdick DB, et al. Among authors: ramsey sa. BMC Bioinformatics. 2010 Jul 14;11:377. doi: 10.1186/1471-2105-11-377. BMC Bioinformatics. 2010. PMID: 20630057 Free PMC article.

8

Mechanisms of urokinase plasminogen activator (uPA)-mediated atherosclerosis: role of the uPA receptor and S100A8/A9 proteins.

Farris SD, Hu JH, Krishnan R, Emery I, Chu T, Du L, Kremen M, Dichek HL, Gold E, Ramsey SA, Dichek DA. Farris SD, et al. Among authors: ramsey sa. J Biol Chem. 2011 Jun 24;286(25):22665-77. doi: 10.1074/jbc.M110.202135. Epub 2011 May 2. J Biol Chem. 2011. PMID: 21536666 Free PMC article.

9

ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation.

Gold ES, Ramsey SA, Sartain MJ, Selinummi J, Podolsky I, Rodriguez DJ, Moritz RL, Aderem A. Gold ES, et al. Among authors: ramsey sa. J Exp Med. 2012 Apr 9;209(4):807-17. doi: 10.1084/jem.20111202. Epub 2012 Apr 2. J Exp Med. 2012. PMID: 22473958 Free PMC article.

10

Urokinase plasminogen activator induces pro-fibrotic/m2 phenotype in murine cardiac macrophages.

Meznarich J, Malchodi L, Helterline D, Ramsey SA, Bertko K, Plummer T, Plawman A, Gold E, Stempien-Otero A. Meznarich J, et al. Among authors: ramsey sa. PLoS One. 2013;8(3):e57837. doi: 10.1371/journal.pone.0057837. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536772 Free PMC article.

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