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Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.
Patané JSL, Martins J Jr, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Patané JSL, et al. BMC Genomics. 2019 Sep 9;20(1):700. doi: 10.1186/s12864-019-6007-4. BMC Genomics. 2019. PMID: 31500575 Free PMC article.
Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses.
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, Araújo FR, Setubal JC. Patané JS, et al. Genome Biol Evol. 2017 Feb 13;9(3):521-35. doi: 10.1093/gbe/evx022. Online ahead of print. Genome Biol Evol. 2017. PMID: 28201585 Free PMC article.
Best practices for justifying fossil calibrations.
Parham JF, Donoghue PC, Bell CJ, Calway TD, Head JJ, Holroyd PA, Inoue JG, Irmis RB, Joyce WG, Ksepka DT, Patané JS, Smith ND, Tarver JE, van Tuinen M, Yang Z, Angielczyk KD, Greenwood JM, Hipsley CA, Jacobs L, Makovicky PJ, Müller J, Smith KT, Theodor JM, Warnock RC, Benton MJ. Parham JF, et al. Among authors: patane js. Syst Biol. 2012 Mar;61(2):346-59. doi: 10.1093/sysbio/syr107. Epub 2011 Nov 21. Syst Biol. 2012. PMID: 22105867 Free PMC article. No abstract available.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Assis RAB, et al. Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1. Sci Rep. 2017. PMID: 29170530 Free PMC article.
37 results